Halomonas sp. DN3: NKF27_20915
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Entry
NKF27_20915 CDS
T10930
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hadn Halomonas sp. DN3
Pathway
hadn03420
Nucleotide excision repair
hadn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hadn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NKF27_20915 (uvrD)
03430 Mismatch repair
NKF27_20915 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hadn03400
]
NKF27_20915 (uvrD)
Enzymes [BR:
hadn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NKF27_20915 (uvrD)
DNA repair and recombination proteins [BR:
hadn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NKF27_20915 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NKF27_20915 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_22
Motif
Other DBs
NCBI-ProteinID:
USZ49900
LinkDB
All DBs
Position
complement(4840095..4842299)
Genome browser
AA seq
734 aa
AA seq
DB search
MDDVTAIIDGLNAAQHEAVCAPQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYAVLA
VTFTNKAAREMRTRLEALLGISLRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLIKRLLKDNKIDDERFPPRQVQSFISGCKEEGLRPHQVRINGDAYVEQMVALYDVYQL
TCERGGLVDFGELLLRSLELLRDNPALLAHYQERFAHVLVDEFQDTNTLQYAWLKLLTGQ
RTPMTVVGDDDQSIYGWRGARVENIRRFEQEFSDTKTVRLEQNYRSTSAILDAANALIKQ
NSDRMGKELWTAGSRGEPISVYAGFNDMEEARFIVDTIKEKVDEGFKRQEVAILYRSNAQ
SRVIEETLIRQGMPYRIYGGQRFYERLEIKNALAYLRLLLNRDDDASLERVINVPARGIG
TRTVEGLRDRARRTEVSLWQAIHDTLTDGSLKGRAANAVGAFANLIEGLDNDTSGMALHE
IIAHVNQRSGLIDHHLSEKGEKGQARVENLEELINAARAFTQGETLDNVEAGEGMAALEA
FLAEAALNAGEHEADEFEDSVQLMTLHSAKGLEFPVVFVAGVEEGLFPHRMSLEEPGRLE
EERRLCYVGVTRAMQKLYLTHAEIRRMHGKETFQRPSRFLRELPESLLEEVRLRGQVSRP
VSARPAPSRFAQTTVEASGDLPALSLGQRVRHPVFGEGVILNAEGEGERARVQVSFEGHG
DKWLVLGFAKLEAL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgatcatcgacggcctcaatgcggcgcagcatgaggcggtctgc
gctccccagggcaatatgctggtgctcgccggcgccggttccggcaagacccgcgtgctg
gtccatcgcatcgcctggctgatgcaggcagaaggcctctcgccctacgcggtgctggcg
gtgaccttcaccaacaaggccgccagggagatgcgcactcgcctggaggcgttgctggga
atctcgctgcgccacgtctgggtgggtacctttcactccatcgcccaccgcctgctgcgt
acccactggcaggacgctcgtctgccccagcacttccagatcatcgactccgatgatcag
ctacgtctgatcaagcgcctgttgaaggacaacaagatcgatgacgagcgttttccgccc
cgtcaggtgcagtcgtttatcagcggctgcaaagaggagggattgcgtcctcaccaggtc
cggatcaacggtgacgcctacgtggagcagatggtggcgctgtatgacgtctaccagctg
acctgcgaacgtggcggcctggtcgactttggcgagctgctgctcaggagcctcgagctg
ctgcgcgacaatcctgctctgctggcccactatcaggagcgcttcgcccacgtactggtc
gacgagttccaggataccaacaccctgcagtatgcctggctgaagctgttgaccggacag
cgcacgccgatgacggtagtcggcgatgacgaccagtcgatctacggctggcgcggtgcg
cgggtggagaacattcgtcgcttcgagcaggagttcagcgacaccaaaacggtgcgcctg
gagcagaattatcgctccaccagcgccatcctcgacgccgccaacgccctgatcaagcag
aactcggatcgcatgggcaaggagctgtggaccgccggcagtcgtggcgaaccgatctcg
gtctacgccggtttcaacgacatggaggaggcacgcttcatcgtcgacaccatcaaggaa
aaggtcgacgaggggttcaagcgccaggaggtggccatcctctatcgctccaacgcccag
tcccgcgtcatcgaggagaccctgattcgccagggcatgccctaccgcatctacgggggc
cagcgcttctacgagcgcctcgagatcaagaacgccctggcctacctgcggcttctgctc
aaccgcgacgacgatgcctcgctggagcgggtgatcaatgtccctgcccgcggtatcggt
acccgcaccgtggaagggctgcgcgatcgcgcccgtcgtaccgaagtgtcgctgtggcag
gcgatccacgacaccctgaccgacggctcgctcaaggggcgtgcggccaacgccgtgggt
gcctttgccaatctgatcgaaggcctcgacaacgacacctcggggatggcgcttcacgag
atcatcgcccacgtgaatcagcgcagtggactgattgaccatcatctgagcgagaagggt
gaaaagggacaggctcgggtcgagaacctggaagagctgatcaacgccgcccgtgccttc
acccagggtgagacgctggacaacgtcgaagccggggagggcatggccgcgctggaagcc
tttctggccgaagctgcccttaacgctggcgagcacgaggccgacgaattcgaggacagc
gtccagttgatgacgctgcactcggccaagggactcgaatttcccgttgtgttcgtggcc
ggggtcgaggaaggtctgtttccccaccgcatgtcgctggaagaacccgggcgcctggag
gaggagcgcaggctctgctacgtcggggtgacgcgcgccatgcagaagctctacctcacc
cacgccgagatccggcgcatgcacggcaaggagacctttcagcgcccgtcacgctttctg
cgtgaattgccggagtcactgctcgaggaggtgcgtctgcgtggccaggtgtcacgtccg
gtcagcgcccggccagcgccgtcgcgcttcgcccagacgaccgtggaggcgagcggcgat
ctgcctgccttgtcgttgggccagcgggtgcgccatccggtattcggggagggggtcatc
ctcaacgccgaaggagagggcgagcgggcccgtgtccaggtcagtttcgaaggccacggc
gacaagtggctggtgctgggcttcgccaagctggaagcgctgtaa
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