Halohasta litchfieldiae: halTADL_0664
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Entry
halTADL_0664 CDS
T05239
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hae
Halohasta litchfieldiae
Pathway
hae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
halTADL_0664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hae03019
]
halTADL_0664
03016 Transfer RNA biogenesis [BR:
hae03016
]
halTADL_0664
Enzymes [BR:
hae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
halTADL_0664
Messenger RNA biogenesis [BR:
hae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
halTADL_0664
Transfer RNA biogenesis [BR:
hae03016
]
Prokaryotic type
tRNA degradation factors
halTADL_0664
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF8012
Motif
Other DBs
NCBI-ProteinID:
ATW87465
UniProt:
A0A1H6XHX7
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All DBs
Position
complement(648783..650114)
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AA seq
443 aa
AA seq
DB search
MSDDTVQTGTAEDQGPVRVTEDIADQLAAKREDLFEEFELRDEFPSDVLVEARKRTEDVY
DEIESELDERRDLRELTTWTTDPADAQDFDDAISIDEDEEHYTLWVHIADVSHYVHPGSE
MWAEALKRCNTIYLPAYTVHMLPPILAETVCSLVPNEDRLAHTVEMTIDRETLSFEEVDI
YKSVIHSDERMTYTQAENRLEEEGTPLHEECSLVFELAEQLHQQRKEDGSLVLNPARDRA
HTIVEECMLKANKAVTHELMWGRGVEAMYRVHPQPTPEQWNKALREIQELDSVSIPGGSW
DDPRKAVNAALEESPGRMLNKIQRAVLKVMPRARYMNDPFGGHHALNFDIYGHFTSPIRR
LSDLINHWIVAENEVPETLLELCDRASDKQKDGETVERLYKQFMQETHLDPHAINNRGLE
VLSEAEIAELDDDDRERVHGVDA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgacaccgtccaaaccgggactgccgaggatcaaggcccggtccgggtgacc
gaggatattgccgatcagttagccgccaaacgcgaggacctcttcgaagagttcgaactc
cgcgacgagttccccagcgacgtgttggtcgaggcccgcaagcgaaccgaggacgtctac
gatgagatcgaatccgaactcgacgagcggcgagacctacgcgagctgacgacatggacg
accgatcccgccgacgcccaggacttcgacgatgcgatcagcatcgacgaagacgaggaa
cactacacgctgtgggttcacattgccgacgtgagtcactacgtccatcccggctcggag
atgtgggccgaggcactcaaacgctgtaataccatctatctcccagcctatacggttcat
atgctgcctcccattttggccgagacagtctgttcactggttcccaacgaagaccgactg
gcccacaccgtcgagatgacaatcgaccgcgagacgctctcgttcgaggaggtcgacatc
tacaaatcggtgatccacagcgacgaacgaatgacctacacgcaggccgagaaccgtctt
gaggaggaaggcacgccgctccacgaggagtgttcgctggtcttcgagttggccgaacag
ctccaccaacagcggaaggaagacggttcgctcgtgctcaatccggcacgggatcgggcc
cacaccatcgtcgaggagtgtatgctgaaggccaacaaggccgtcacccacgaactgatg
tggggccgtggtgtcgaagcgatgtaccgtgtccacccacagccgacgcccgaacagtgg
aacaaggcccttcgggagattcaagaactcgacagcgtctccatccccggtggctcgtgg
gacgacccacggaaggcggtcaacgccgccctcgaagagtcacccgggcggatgctcaac
aagatccagcgcgccgttctcaaggtaatgccacgggcccgctacatgaacgacccattc
ggtggccatcacgcgctgaacttcgatatttatgggcatttcaccagtccgatccgtcga
ctctcggacctgatcaaccactggatcgtcgccgaaaacgaggtgcccgaaaccctgctg
gaactctgtgatcgagcctcggacaaacagaaagacggcgagactgtcgaacggctttac
aagcagttcatgcaggagacccatctcgatccccacgcgatcaacaaccgcggcctggag
gtgctctcggaggccgaaatcgcggaacttgacgacgacgaccgcgagcgagttcacggc
gtcgacgcctaa
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