Halohasta litchfieldiae: halTADL_1070
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Entry
halTADL_1070 CDS
T05239
Name
(GenBank) replication factor A1
KO
K07466
replication factor A1
Organism
hae
Halohasta litchfieldiae
Pathway
hae03030
DNA replication
hae03420
Nucleotide excision repair
hae03430
Mismatch repair
hae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
halTADL_1070
03420 Nucleotide excision repair
halTADL_1070
03430 Mismatch repair
halTADL_1070
03440 Homologous recombination
halTADL_1070
03460 Fanconi anemia pathway
halTADL_1070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hae03000
]
halTADL_1070
03032 DNA replication proteins [BR:
hae03032
]
halTADL_1070
03400 DNA repair and recombination proteins [BR:
hae03400
]
halTADL_1070
Transcription factors [BR:
hae03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
halTADL_1070
DNA replication proteins [BR:
hae03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
halTADL_1070
DNA repair and recombination proteins [BR:
hae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
halTADL_1070
MMR (mismatch excision repair)
halTADL_1070
DSBR (double strand breaks repair)
HR (homologous recombination)
halTADL_1070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
OB_MEIOB_N
Ssb-like_OB
DUF7406
Motif
Other DBs
NCBI-ProteinID:
ATW87864
UniProt:
A0A1H6SIQ2
LinkDB
All DBs
Position
1036896..1038419
Genome browser
AA seq
507 aa
AA seq
DB search
MRGLVLPQCILMGVIADVYDDLDTDVPLEEFREAVEDKVEQMGGLADEETAAMLIAHELK
DEEVNGIADIDPGMDEVKFLGKIVSVGELRTFERDGEDEEDGYVVNMEVADSTGRIRISM
WDQLAVSAVGDPEGEQHGQLDVGDVLRIAGRPKDGYNGVEVSVDKAEPDSEAEVDVEVLD
VHRVEDLSLGLSDVNLKGRILDVGTVRTFDRNDGSEGRVSNLAVGDPTGRIRVTLWDEKA
DLVDELTADQSVEIVDGYVKERDGSLELHVGSRGAVEPLDEEIEYVPETTDIGSVEIGQT
VDISGGVIEDDGKRTFDRDDGSEGQVRNVRLKDETGDIRVALWGDKADKDIELADHVLVT
DAEIQDGWQDELEASAGWQSTVSILESGVSTDKSDDEPTEATDREAEAAAAAGGLSAFED
GGSGGASESAATAETDANDDSESTKTTSDSGEIVEFTGTVVQTGNPVILDNGSETRSVDT
GDSLRLGEEVTVRGPEMDGTISADELF
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtctggtcctgcctcagtgtatactcatgggtgtcatagccgacgtctacgac
gacctcgacaccgacgttccgctcgaagagttccgggaggccgtcgaagacaaggtcgaa
cagatgggcgggctggccgacgaagagaccgcggccatgctcatcgcacacgaactgaaa
gacgaggaggtaaacgggatcgccgacatcgaccccgggatggacgaggtcaaattcctc
ggcaagatcgtctcggtcggcgaactccgaactttcgagcgcgacggcgaagacgaggaa
gacggctacgtcgtcaacatggaagtcgccgacagcaccggccgcatccgcatctcgatg
tgggaccaacttgcggtctcggcggtcggcgatcctgaaggcgaacagcacggccagctt
gacgttggtgatgtcctccggatcgccggtcgaccgaaggacggctacaacggcgtcgag
gtcagcgtcgacaaggccgaacccgactccgaggccgaggtcgatgtcgaagttctcgat
gtccaccgcgtcgaagacctctcactcggcctctcggatgtaaacctcaagggccggatt
ctcgatgtcggaaccgtccgcacgttcgaccgcaacgacggctcggaaggtcgtgtctcg
aacctcgcggtcggcgatccgaccggccggattcgagtgacgctgtgggacgagaaggct
gatctcgtcgacgagctcactgccgatcagtcggtcgaaatcgtcgacggctacgtgaag
gaacgcgacgggagtctcgaactccacgtcggctcccgcggcgcggtcgaaccactcgac
gaggagatcgaatacgtccccgagacgaccgatatcggttcggtcgaaatcggccagaca
gtcgacatctcgggcggtgtgatcgaggacgacgggaaacgcaccttcgaccgcgacgat
ggctcggagggccaagtcagaaacgtccggctcaaagacgagacgggcgacattcgggtt
gccctctggggcgacaaagccgacaaggatatcgaactcgccgatcacgtcttggtcact
gatgcagagatccaagacggctggcaggacgaactcgaagccagcgcaggctggcagtcg
acggtgagtatcctcgaatccggcgtcagcaccgacaaatcagacgacgagccgacggag
gcaaccgaccgtgaggccgaagcggccgctgccgctggtggactgtcggcatttgaggac
ggcggctcgggcggagcaagcgaatcggctgcgacagcagagacagatgcgaacgacgac
agcgagtcgaccaagactacgtccgactccggcgagatcgtcgagttcactgggacagtt
gtccagaccggcaacccggtgattctcgacaacgggagcgaaacgcggagcgtcgacacc
ggcgacagcctgagactcggtgaagaagtgactgtccgtgggcccgagatggacggaacg
atcagcgccgacgaactgttctaa
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