Halohasta litchfieldiae: halTADL_1397
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Entry
halTADL_1397 CDS
T05239
Name
(GenBank) transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hae
Halohasta litchfieldiae
Pathway
hae03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
halTADL_1397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hae03021
]
halTADL_1397
Transcription machinery [BR:
hae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
halTADL_1397
Prokaryotic type
Archaeal type
TFB
halTADL_1397
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Nuc_rec_co-act
Sigma70_r4
Cyclin_C
Motif
Other DBs
NCBI-ProteinID:
ATW88172
UniProt:
A0A1H6VZJ8
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All DBs
Position
1348445..1349407
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AA seq
320 aa
AA seq
DB search
MVSPDSRQITESFQTQQVDDTAENIEPDEVDAEDVVQTADGELIHEPTGLVLEEDQIDHG
PEWRAFTHSDRQEVSRVGAPISQNFHDKGLTTTIDWKNQDASGRSLSSQKQNQMRRLRKW
QDRIRTQNTGERNLQLALSEIDRMTSALGIPDTVQQVAAVMYRRALNEDLIRGRSIEGVS
TALLYAACRQEGIPRSLEEVAEVSRVDRKKIGRTYRHVANDLSLKMKPADPKQYVPRFAS
ELGLSEQTRRKAKSVIDTTAEEGLLSGKSPTGFAAAAIYIASRLCNERRIQREIADVANV
SEITVRNRYQEQMEVLDQNS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggtatctcccgacagtcgacaaattactgagagctttcagacccaacaagttgatgat
acagccgagaacattgagccagatgaagtcgacgctgaagacgttgtacagacagcagat
ggtgagttgattcacgaacctacaggactcgttcttgaggaagaccaaatcgaccatgga
ccagagtggcgagcattcactcattcagatcgccaagaagtgtcacgtgttggagcacct
atctcgcaaaatttccatgacaaaggactcacaacaactatcgactggaaaaatcaagat
gcatctggccgatcactttcttctcaaaagcagaatcaaatgcgccgactacggaaatgg
caggaccgtatccggacccaaaacacaggtgagcgaaatcttcaactcgcactaagtgag
attgatcgaatgacaagtgcccttgggattccagatacggttcagcaagttgctgcagtt
atgtatcgacgggctctcaatgaagatttgattcgtggacgatctatcgaaggtgtctcg
actgcactgttatatgcggcctgtcgacaagagggaattcctcgaagcctcgaagaagtc
gccgaggtctcccgggtcgaccgcaagaaaatcgggcggacctaccgacatgttgccaac
gatttaagccttaaaatgaagcctgctgacccaaaacagtacgtaccgcgatttgcctcc
gaattaggtctcagcgaacagacccgtagaaaagctaaaagcgtaatcgataccactgcc
gaggaaggtcttctctctgggaaatctcccacagggtttgcagctgccgcgatctacatc
gcatcacggctctgtaatgaaagacggattcaacgagaaattgctgatgtcgcaaatgta
tctgagattactgttcgaaatcgctatcaagaacagatggaggtattggatcaaaatagc
taa
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