Halohasta litchfieldiae: halTADL_1458
Help
Entry
halTADL_1458 CDS
T05239
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hae
Halohasta litchfieldiae
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hae03400
]
halTADL_1458
DNA repair and recombination proteins [BR:
hae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
halTADL_1458
Archaeal homologous recombinant proteins
halTADL_1458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_13
SMC_N
AAA_21
Rad50_zn_hook
SbcC_Walker_B
ABC_tran
AAA_29
Prefoldin_2
HsbA
Seryl_tRNA_N
Baculo_PEP_C
Snapin_Pallidin
DUF948
Phage_GP20
Occludin_ELL
Recep_L_domain
DUF4131
DUF1664
KH_5
AAA_15
GAS
Motif
Other DBs
NCBI-ProteinID:
ATW88224
LinkDB
All DBs
Position
complement(1404935..1407646)
Genome browser
AA seq
903 aa
AA seq
DB search
MKIIDVTLENIKSYEDRTTISLRGGVTAILGKNGSGKSTIQEAIGFALFDSLPFNNKEFV
REGASSGTVEVTIELDEADGLQRYRVTRSAGYSKYGVARYDGERDEWIDQDIDSKKALMK
WLCARFDLKDSDELGNLWESCIGVPQTRFLSDFAQRPAARKSTFDELLNIDAYEESWSTL
KGVPDQIKAERGQVREEIRELTGEVQSLPEEREDRARLEAEIDELSAEISSAEAELTKAE
DRYEELEAIEGRIAEIEGDIEQNEQAIEAKESALEVAETELKTAREAERKCEEAREGYEE
YRDAKAQQEALEEQIDELEKLRTEQQEQEAELGKLEIRQEALEEQVKKHEVARENLEEYE
AQKDRYEELEDRISELEADQKTVERLEGEISDLDSDARDTLTELREEVEIIEEVEAEAAK
VVDAADLREEIGEIKAEIASLNAEETDLKEKLEQLEDAEVDAPCPTCGKSLKADHRTDLI
EEREARIEEIQSQQEALAQEISELEAELSEAEKVEKRVSKLDMRRNQVSELQDDLRELNG
ERNETRERIVSLREAIDELPGLQEERDSLEDANDAYYTAKAQVDEYADAPSELGEVEESI
ESVDAEIERLDEEIDEFGDVEDELEAVKETLSETEEAYQQFERNKQAAEKLEERQAAVAE
IEETLESLNDEGEDLSDKLEAENEAFDTDEYETLGEQIADYNKQINTLSGQRSEKEKTLE
NVSATVEKLEGKLEERKQEFERLRELAADQKFASWVRDNVRAAGPKMRNVITDRIGKRAD
AIFRSIRGEKAEQLEWTSDYDIVVTDADVQKSFSTLSGGEKMAAALAVRLAILEQISGLG
IAFLDEPTANLDQDKKANLVGQLNRLDAFEQLTVISHDSTFDSMTDYSITIEKTSQTSEV
MSD
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaagattatcgatgttacattagagaatatcaagtcgtacgaggatagaacaacgatt
tcgcttcgtgggggtgtgactgcgattctcggtaagaacgggtctgggaagtcgacgatt
caggaggcaattgggtttgcgctttttgattcgcttccgttcaataataaggagtttgtt
cgggaaggcgcatcttcagggactgtggaggtcacgatcgaactggatgaagcagacgga
ttacagaggtaccgtgtaactcggtctgccgggtattcgaaatacggtgttgcgcggtat
gatggcgagcgcgatgagtggatcgatcaggatatcgattcgaagaaagcgttgatgaag
tggctttgtgcgaggtttgatctgaaggatagcgatgagttggggaatctgtgggagtcg
tgtatcggggtgcctcaaacacggtttctctctgatttcgcacagcgaccggcagcacgg
aagtcaacgtttgatgagctactgaatattgacgcgtatgaggagtcttggagcactcta
aaaggagttccagatcaaattaaagccgaacgcggacaggtgcgagaggagatccgtgag
ctcacgggggaagtgcagagtctccctgaggaacgagaagacagagcacgattagaagcg
gaaattgacgagttgtcagcggaaatttcttcagcagaagccgagcttacaaaggccgaa
gacagatacgaggagttggaggctatcgaaggtcgaattgcagagattgaaggagatatc
gagcagaacgaacaagcgattgaggcgaaagagtcggctctcgaagtagcagaaactgag
ctcaaaactgcgcgagaggccgaaaggaagtgcgaagaggctcgtgaagggtacgaagag
tatcgtgatgcgaaggctcagcaggaagcacttgaggaacagatcgatgagttagagaaa
ttacggacggaacaacaggaacaagaagcggaactcgggaagctcgaaatccggcaagaa
gcactcgaagagcaggttaaaaaacacgaggtggctcgagagaatctcgaagagtacgag
gctcaaaaggaccgctatgaggaacttgaagaccgtatttctgaattagaagctgatcaa
aagactgtcgagcggttggaaggtgagatttcagatcttgattctgatgcaagagacaca
ctcaccgagcttcgtgaagaagttgaaattattgaggaggttgaggctgaggcagcgaag
gttgttgatgcagctgacctgcgtgaggaaattggcgaaataaaagcagaaattgcatcg
ttgaatgcggaagaaaccgatctgaaggagaaacttgagcagcttgaagatgcggaagta
gacgctccgtgtccgacctgtggaaaatcgctgaaggcagatcatcgcacagatctcatc
gaagagcgtgaagcccgaatcgaagagatacagagtcaacaagaagctcttgctcaggag
atctcggaattagaggcagagttgtccgaggctgaaaaggtcgaaaagcgagtttcgaag
cttgatatgcgtcggaaccaagtctctgagttacaggatgaccttcgtgaactcaacggg
gagcgaaatgagactcgggaacgaatagtctcgctcagagaagcaattgatgaattacca
ggattgcaagaagagcgtgattcgcttgaagatgcgaatgatgcgtactacacagcgaag
gcccaagtcgatgagtacgctgatgcgccgagtgaacttggtgaagtcgaagagtcgatt
gagtctgtagacgcagaaatcgaacggttagacgaagagattgatgagttcggtgatgtc
gaagacgagcttgaagcagtaaaagaaacgctcagtgaaaccgaagaggcctaccaacag
tttgaacggaataaacaggctgctgaaaagctggaggaacgccaagcagccgtagcggag
attgaggagacacttgagtcgctcaacgacgagggtgaagacctctctgacaagctagag
gctgagaatgaagcgtttgacactgacgagtatgagacgctcggtgagcagattgcggat
tacaacaagcagatcaacacgctctcgggtcaacggtcggagaaagagaaaacacttgag
aacgtttctgcgacggttgagaaattagaaggcaagttagaggagagaaaacaagagttt
gaacggctgcgtgaacttgctgccgaccagaaattcgcttcatgggtgcgcgataacgtc
cgtgctgcgggaccgaaaatgcggaatgtcatcacagatcgtatcgggaaacgagcagat
gctatcttccggtcaattcggggcgaaaaagccgaacagctcgaatggacatccgactat
gatatcgtcgttactgatgctgatgttcagaaatcgttctcgacgctgtcaggcggtgaa
aagatggctgctgcgctagcggttcgactggctatactggaacagatctctggtctcgga
attgcgttccttgatgagccgaccgcaaacctcgatcaagataagaaagcgaaccttgtc
gggcaactcaacagactcgatgcgttcgagcaactcacagtcatcagccacgattcgaca
tttgattcgatgactgattacagcatcactatcgagaaaaccagccagacctcggaagtg
atgagtgactaa
DBGET
integrated database retrieval system
