Halohasta litchfieldiae: halTADL_1817
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Entry
halTADL_1817 CDS
T05239
Name
(GenBank) RecJ-like exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hae
Halohasta litchfieldiae
Pathway
hae03410
Base excision repair
hae03430
Mismatch repair
hae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
halTADL_1817
03430 Mismatch repair
halTADL_1817
03440 Homologous recombination
halTADL_1817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hae03400
]
halTADL_1817
DNA repair and recombination proteins [BR:
hae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
halTADL_1817
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
halTADL_1817
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
halTADL_1817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
DUF6003
Motif
Other DBs
NCBI-ProteinID:
ATW88571
UniProt:
A0A1H6QXR5
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All DBs
Position
complement(1745086..1746528)
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AA seq
480 aa
AA seq
DB search
MATVHPVGALADTASACAERLRAADSVLLASHIDADGLTSAAIAATALERAGISFETVFS
KQLDEAELESIAATDHETVLFTDFGSGQLDLIAAHETAGDFIPVIADHHQPADATTEFHL
NPLLVDINGASELSGAGASYVLARALEATDSDDAVDNRDLAALAVVGAVGDMQAGVDGLR
GANTDIVKEGIEAGVIEEMTDLTLYGKQTRPLPKLLEYASDARIPGISNDASGAIEFLSE
LDLDLKVDDEWRCWVDLSDDERQTVASALVRRAVSSGVPSGRINDLIGTSYQLSREEPGT
ELRDVSEFSTLLNATARYERADVGLAVCLGDRDEALDRARHLLRNHRRNLSEGLEWVKTE
GISAEDHLQWFDAGDEIRETIVGIVAGMAVGAPGVRRDLPIIAFAEKSDTEIKVSSRGSH
QLIRNGLDLSEVMREASRAVGGDGGGHDVAAGATIPTGTQVEFIDHANELVGAQLGGSAD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggctacggttcatcctgtaggggcgcttgctgacaccgcgagtgcctgcgccgaacga
ctccgggcggccgacagcgtcctgctggcatcccatatcgacgccgatggactgaccagc
gccgcaatcgccgccaccgcgctcgaacgggcgggaatctccttcgagaccgttttctcg
aaacaactcgacgaggcggaactcgaatctatcgccgccaccgaccacgaaacggttttg
tttactgacttcggcagcggccaactcgatctgatcgctgcccacgagactgctggcgat
tttatccctgttattgccgatcaccaccagcccgccgacgcgaccaccgagttccatctc
aatcccctcttggtcgacatcaacggggcctcggaactctctggggctggcgctagctat
gtcctcgcgcgtgcgttggaggcaactgattccgacgacgcagtcgacaaccgcgacttg
gccgcgctcgcagtcgtcggtgcggtcggcgatatgcaggccggtgtcgacggcctccgc
ggagcaaatacggacatcgtcaaggagggcatcgaggccggtgtgatcgaggaaatgaca
gacctcacgctgtacggcaaacagactcggcccctcccgaaactgcttgagtacgccagc
gatgcacggattcccggcatctcgaacgatgcctcgggcgcaatcgagtttttgtccgaa
cttgatctcgacctgaaagtcgacgacgagtggcgctgttgggtcgacctctccgatgac
gagcgacagaccgtcgccagcgccttggttcggcgggcggtctcaagtggggtcccctcg
gggcggatcaacgatttgatcggcacgagctaccaactcagccgcgaggagccggggacc
gaacttcgggacgtcagcgagttttcgacgctgttgaacgccaccgcccgctacgaacgg
gccgatgtcggcctcgcggtctgtctgggcgaccgcgacgaggcgctggatcgcgctcgc
cacctgctcagaaaccaccgacgaaacctttctgaaggattggaatgggtcaaaaccgaa
ggaatctctgccgaggaccatctccagtggttcgacgctggggacgaaatccgtgaaacc
atcgtcggcatcgtcgccgggatggccgtcggcgcgcccggcgtgcgacgtgatctgccg
atcatcgccttcgcggagaaatccgacaccgaaatcaaggtgtcgtcccgtggcagtcac
caactgatccgcaacgggctggatctctcggaggtcatgcgcgaggcctcccgcgcggtc
ggtggcgacggcggcggccacgacgtcgccgcaggcgcgacgatcccgaccggaacacag
gtcgagttcatcgaccatgcgaacgaactggttggtgcacagctcggtggatcagcggac
tga
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