Halohasta litchfieldiae: halTADL_2415
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Entry
halTADL_2415 CDS
T05239
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hae
Halohasta litchfieldiae
Pathway
hae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
halTADL_2415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hae03019
]
halTADL_2415
Messenger RNA biogenesis [BR:
hae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
halTADL_2415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ATW89155
UniProt:
A0A1H6XX63
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All DBs
Position
2328387..2329730
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AA seq
447 aa
AA seq
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MEIEITTVGGYEEVGRQMTAVRMDDDIVIFDMGLNLSQVLIHDNVQTERMHSLDLIDMGA
IPDDRVMSELDGEIKAIVPTHGHLDHIGAIPKLAHRYDAPVVATPFTIELVREQIRDEDK
FDVQNDLQVMNAGETMRIGDKTEMEFVNVTHSTIDAINPVLHTPEGAIVYGLDKRIDHNP
VLGDPFDMKRFREIGREGEGVLCYLEDCTNANRKGRTPSESVARKELHDTMLSLEDYDGG
MVATTFASHIARVSSLLEFAQEIGRKPILLGRSMEKYTGTATHLDVDLPDDIEMYGHRRA
IDQSLNRIMKDGKENFLPIVTGHQGEPRALLTRMGRGETNYDFDNGDKVIFSAGIIPEPT
NEGNRYQSERLLKMQGARIYDDIHVSGHLSQEGHYQMLDALQPKELIPAHQNLKGLSGYV
DTANSFGYEVGRDLHISRNGNILQLTE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaattacgacagttggcggctacgaagaggttggtcgacagatgacggca
gtccgtatggacgatgacatcgtcatcttcgatatgggcctgaacctctcgcaggtactg
attcacgacaacgtccagactgagcgcatgcacagtctggatctcatcgatatgggcgcg
atccccgacgaccgcgtgatgagcgaactcgacggcgagatcaaggccatcgtcccgacc
cacggccacctcgaccacatcggcgcgatccccaaactcgcccaccgctacgacgccccc
gtcgttgcgaccccattcaccatcgaactcgtccgcgaacagatccgcgacgaggacaag
ttcgacgtccagaatgacctgcaggtcatgaacgccggcgagacgatgcggatcggcgac
aagactgaaatggagttcgtcaacgtcacccactcgacgattgacgccatcaacccggtc
ctccacaccccggaaggagccattgtctacgggcttgacaaacgtatcgaccacaaccca
gtgctcggtgatccgttcgacatgaaacggttccgcgagatcggccgcgagggcgagggt
gtcctctgttatctcgaagactgtacgaacgccaaccggaagggtcggacaccttccgag
tcggttgcccgaaaagagctccacgacaccatgctcagtctcgaagattacgacggcggc
atggttgcgactaccttcgcaagccacatcgcccgtgtctccagcctcctcgaattcgct
caagagattggccgcaaaccgatcctgctggggcgttcgatggagaaatacaccgggacc
gcaacgcatctcgacgtcgaccttcctgacgacatcgagatgtacggtcatcgacgcgcc
atcgaccagagcctcaaccgcatcatgaaagacggcaaggagaacttcctgccaatcgtg
acgggccatcagggcgagccacgggcgctgctgacccgaatgggccgcggcgagaccaac
tatgacttcgacaacggcgacaaggtcatcttctcggccgggatcattcccgagccgaca
aacgaggggaaccgctaccagtccgagcgcctcctgaaaatgcagggcgcacggatctac
gacgacatccacgtctcgggccacctcagccaagagggccactaccagatgctcgatgca
ctccagcccaaagagctgattccggcccaccagaacctgaaaggcctgtcgggctacgtc
gacacggccaactcctttggctacgaggtcggtcgcgaccttcacatcagccggaacggc
aacatcctccagctcaccgaatag
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