Halohasta litchfieldiae: halTADL_2716
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Entry
halTADL_2716 CDS
T05239
Name
(GenBank) transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hae
Halohasta litchfieldiae
Pathway
hae03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
halTADL_2716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hae03021
]
halTADL_2716
Transcription machinery [BR:
hae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
halTADL_2716
Prokaryotic type
Archaeal type
TFB
halTADL_2716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Sigma70_r4
Anti-TRAP
YopD
Zn_ribbon_FGT1_1
DUF8106
Zn_ribbon_PaaD
Zn_ribbon_3
Zn_ribbon_LysW
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATW89432
UniProt:
A0A1H6UKP5
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All DBs
Position
2633430..2634416
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AA seq
328 aa
AA seq
DB search
MTDNVRTFTDERTRRRDESTTESTGSEETVRCPECEGHLTTDTEHGETVCADCGLVVEED
EIDHGPEWRAFDSNEKDNKSRVGAPTTNMMHDKGLSTNIGWQDRDAYGKSLSSRQRQKMQ
RLRTWNERFRTRDSKERNLKQALGEVDRMASALGLPDNVRETASVIYRRALSEDLLPGRS
IEGVSTASLYAAARQAGTPRSLDEVTSVSRVEKDEIARTYRYVARELSLEIKPADPEQYV
PRFASELGLSDEAERRARELLSTAKAQGVHSGKSPVGLAAAGVYAASLLTNQKVTQSEVS
DVANISEVTIRNRYHELLEADQGTQSVA
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaacgtccgtacgtttaccgacgagcgcacccgccggcgagacgagtcgacc
acggagtcgactgggtccgaagagacggttcgctgtccggaatgtgagggtcaccttacg
accgacaccgaacacggtgagacggtatgtgcagactgtgggctcgtcgtcgaggaggac
gagatagatcacggccccgaatggcgtgccttcgacagtaacgagaaggacaacaaatcg
cgtgtcggcgcgccgacgacgaacatgatgcacgacaagggcctgagtacgaatatcggc
tggcaggaccgcgacgcctacggcaagtcgctgtcctcacgccagcgacaaaagatgcag
cggcttcggacgtggaacgagcggttccgaacccgcgacagcaaagagcggaacctcaaa
caggcactcggcgaggtcgaccggatggccagtgcgctggggctgccggacaacgtgagg
gaaaccgcctcggtcatctatcgtcgggcactgagcgaggatctcctgccgggtcgttca
attgagggtgtctcgacggcatcgctgtacgcggcggcccggcaggcaggcaccccgcga
agtctcgacgaggtgacgagtgtctcgcgggtcgaaaaggacgaaatcgcccgcacctac
cgttatgtcgctcgcgagctctccttggagatcaagccagccgaccccgagcagtacgtc
ccgcggtttgcctccgaactcggcctctccgacgaagccgagcgccgcgcccgtgaactc
ctgtcgacggccaaagcacagggcgtccacagcggcaaatcgccggtcggcctcgcggcc
gcaggcgtctacgccgcttcgttgctcaccaaccagaaggtgacccaaagcgaagtcagc
gacgtggccaacatctccgaggtgacgatccgcaaccgctaccacgaactactcgaagcc
gaccaaggcacccagtcggtcgcctga
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