Halohasta litchfieldiae: halTADL_3126
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Entry
halTADL_3126 CDS
T05239
Name
(GenBank) transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hae
Halohasta litchfieldiae
Pathway
hae03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
halTADL_3126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hae03021
]
halTADL_3126
Transcription machinery [BR:
hae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
halTADL_3126
Prokaryotic type
Archaeal type
TFB
halTADL_3126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Trm112p
Sigma70_r4
Anti-TRAP
HTH_Tnp_ISL3
LysW-like_globular
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
ATW89828
LinkDB
All DBs
Position
complement(3025098..3026096)
Genome browser
AA seq
332 aa
AA seq
DB search
MSERTFTSTNGRSRSRERQGTASETESETESESDTLQCPECSGNVITDDEHGETVCDDCG
LVITEDSVDRGPEWRAFDSAEKDQKSRVGAPTTNTMHDKGLSTNIDWRNKDAYGRSLGAR
QRQKMQRLRKWNERFRTRDSKERNLKQALGEIDRMASALGLPDNVRETASVIYRRALNED
LLPGRSIEGVSTSCVYAAARMAGVPRSLDEIADVSRVEKSEIARTYRYVVRELSLEVRPA
DPEQYVPRFASSLELSEESEMRAKQLLKNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKT
TQAAVSEVADISEVTIRNRYHELLEAEEEMLV
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacgaacgtttacctcgactaacggccgctcgcggtcccgagagcggcaagga
actgcctccgaaaccgaatcagaaaccgaaagcgaaagcgatacgctccagtgccccgaa
tgtagtgggaacgtcatcaccgacgacgaacacggcgagaccgtctgtgacgactgtggc
ctcgtgatcaccgaggactccgtcgaccgtggtcccgagtggcgagcgtttgacagcgcc
gaaaaggaccagaaatcgcgtgtcggtgcgccgaccaccaacacgatgcacgacaaaggg
ttgtcgacgaacatcgactggcggaacaaggacgcctacggtcgctcgctgggtgctcgg
cagcgccagaagatgcagcgactccgcaaatggaacgagcggttccgtacccgcgactcc
aaagagcggaacctcaaacaggccctcggcgagatcgaccggatggcctccgcccttggc
ctgccggacaacgttcgggagaccgcctcggtcatctaccgccgcgcgctcaacgaggac
ctgctgccgggtcgctcgattgagggtgtgtcgacgtcctgcgtgtacgctgccgcccgg
atggcaggcgtcccacggagcctcgacgagattgccgacgtctcccgagtcgagaaaagc
gagattgcccggacctaccgttatgtcgtccgtgagctttcgctcgaagtccgaccagcc
gaccccgaacagtacgtcccgcggtttgcttcgtcgctggagctctccgaggagtccgaa
atgcgggccaaacagctgctgaaaaacgccaaagaacagggcgtccacagcggcaaatcg
ccggtcggcctcgctgcagccgcggtgtacgcggccgcactgctgaccaacgagaagacc
acccaagccgcagtctcggaggtcgctgacatctccgaagtcaccatccgcaaccggtac
cacgagctgctcgaagccgaagaagagatgctggtttag
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