Haemophilus aegyptius: NCTC8502_01204
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Entry
NCTC8502_01204 CDS
T06550
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
haeg
Haemophilus aegyptius
Brite
KEGG Orthology (KO) [BR:
haeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haeg03019
]
NCTC8502_01204
Enzymes [BR:
haeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC8502_01204
Messenger RNA biogenesis [BR:
haeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC8502_01204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
ResIII
AAA_30
NACHT
AAA_25
HA2_N
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
SQH37276
LinkDB
All DBs
Position
1:complement(1123424..1127335)
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AA seq
1303 aa
AA seq
DB search
MKNSSVKHTLTPLQQSLFSQLNDIILVDQRRLSACIHGIGKIKSQEAQQAVAAEIQQQIE
QARLRVEQRKSAVQNPIVFPESLPVSQRKVEIQKLLSEHQVIVVAGETGSGKTTQLPKMC
LELGFGNLGMIGHTQPRRIAARSVAARIAEELETELGGLVGYKVRFNDQISDDTQIKLMT
DGILLAEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRDLKLIITSATIDV
ERFSKHFNNAPIIEVSGRTYPVEVRYRPVVEEDDQDQLLGILNAVDELQAEGRGDILIFM
NGEREIRDTAEALQKQNLKHTEILPLFARLSAQEQNKIFHPSSLNRIVLATNVAETSLTV
PSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDF
NSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDKRHIQDGVKLLEELGAFET
VQTKSGEKRLLTRVGRQLTQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQ
EKQQDSDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQ
DIYHQIRLTVREMGLPINSEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIF
PNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWIEPLAEHLIKKSHSEPLWSKSRGA
VIADEKVTLYGVPIVAVRPVNYGAIDPTVSRQIFIQSALVEGDWNTKHKFFKENQRLVRE
VEELEHKSRRRDILVDDRTLFEFYDQRIGTEVVSQKHFDTWWKKVQQKDPELLNFERSFL
INDDAEQVSKLDFPNFWHQGNLKLKLTYQFEPGTDADGVTVHIPLPLLNQVEMTGFGWQI
PGLREELVIALIKSLPKSYRRNFVPAPNYAQAFLSRAVPLEKPLLDTLIYELRRMTGVTV
EAEHWNWEQIPSHLKMTFRVVDENGKKIAESMNLDELKFNLKDRVQESISAVADDGIEQS
GLHIWSFADLPQCYEQKQRGFSVKAFPAIVDEKDAVAIKLFETEFEQSVAMQQGLRRLLL
LNVPSPIKYLHEKLPNKAKLGLYFTPFGRVLDLIDDCIACAVDKLIADFGGFVWDEAGFE
KLRDFVRENLNEVTVDIAQKVEQILTLTYQLNQRLKGKMDFTMAFALSDIKSQLAGLVYQ
GFVQKSGYDRLPDLQRYLQAIDKRIDKLAQDVNRDRAAMLRIQQVQQAYQQLLAKLPKSK
PISDEVAEIRYMIEELRVSLFAQQLGTKYQISDKRIANIISQY
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacagctcggtaaaacacacattaactcccttacaacaatctcttttttctcaa
ttaaatgacatcattctggtggatcaacgtcgcttatccgcctgcattcatggtattgga
aaaataaaaagccaagaggctcaacaagccgttgccgctgaaatccaacagcaaattgaa
caagctagattacgtgtagaacaacggaaaagtgcggtacaaaatccgattgtttttcca
gaaagcttgcccgttagccaacgcaaagtcgaaattcaaaaactgctttctgaacatcag
gtcattgtggtagcaggggaaactggttcaggtaaaaccacccaattgccgaaaatgtgt
ttggaattaggtttcggcaatttaggcatgattggtcatacccagccacgccgtattgct
gctcgttcggtggcggcgcgtattgcggaagaactggaaacggagcttggtggtttagtc
ggttataaggttcgttttaacgatcaaatcagtgatgatacacaaatcaaattgatgact
gacgggattctgttagcggaaattcaaaacgatcgttttctcaatcaatattcttgtttg
attatcgatgaagcccacgaacgtagcctaaataacgattttattctcggttatctgaaa
cagcttttgccacgtcgtcgtgatttaaaacttattatcacttctgcaaccattgatgtg
gaacgcttttctaaacactttaacaatgcgccgattattgaagtctcaggcagaacctat
cctgttgaagtgcgttatcgtcccgtagtggaagaagacgatcaagatcagctactaggt
attcttaatgcggtggatgaattgcaagcagaaggtcgaggcgatatcttgatctttatg
aacggtgaacgggaaattcgtgatactgccgaagccttgcaaaagcaaaatctaaaacac
acggaaattctaccgctctttgctcgattgtctgcgcaagaacaaaataaaattttccat
ccaagcagtttaaatcgcattgtattggcgaccaacgtcgcagaaacctcattgaccgtg
ccgagcattaaatatgtgattgacccaggtacagcgcgcatttcccgttatagctatcgc
accaaagtacaacgtttaccgattgaacctatttcacaggcatctgcaaatcagcgtaaa
ggtcgttgtggtcgtgtaagtgaagggatttgtattcgtttatattcggaagaggatttt
aattctcgtccagagtttaccgatcctgaaattctacgcaccaatttagcctccgttatt
ttgcaaatgacggcattgggtttggatgatattgaagcgttcccatttgttgatgcgcca
gataaacgccatattcaagatggcgtgaagttgttggaagagttgggcgcgtttgaaact
gttcaaactaaatcgggtgaaaaacgcctattaactagagttggtcgccaactcactcaa
cttccagtcgatccgcgccttgccaaaatgatcctaagtgcggtcaattttggctgcgtt
tatgaaatgatgatcatcgtctctgcgttatccattcaagatccgcgcgagcgtccacaa
gaaaaacagcaagattctgatgaaaaacatcgtcgttttgccgataaaaaatcagatttc
ttggctttcctcaatctttggcgttatctacaagaacaacaaaaagaatcgagtaaaaac
caattccgtcgtcagtgccaaaaagatttcttaaattatttacgcattcgtgaatggcag
gatatttatcatcaaattcgtttaaccgtgcgtgaaatgggcttgccgattaattccgaa
aaagcagaatatcagcaaattcataccgcacttttaagcggtttgctttctcatatcggt
ttaaaagaagcggagaaacaacaatatcttggcgcacgtaatgcccattttgcgattttc
cccaattctgtgcttttcaaaaaacaaccgaaatgggtaatggcggcagagttagtggaa
acctccaaactttgggggcgcatggtggcagaaatagagccagaatggattgagccactt
gccgagcatttaataaaaaaatcccattccgaacccctttggtctaaatctcgtggggcg
gtgattgcagatgagaaagtcacgctttacggtgtgccgattgtggctgtgcgaccagtg
aattacggtgctattgatccaacggtaagccgtcagatctttattcaatctgccttggtg
gaaggggattggaacaccaagcataaattcttcaaagaaaatcaaaggctcgttcgagaa
gtagaagaattggaacacaaaagccgccgccgcgatattttggtggatgatcgcacattg
tttgaattttacgatcagcgtattggcacagaagttgtctctcaaaaacattttgatacc
tggtggaaaaaggtgcagcaaaaagatcctgaattgcttaattttgaacgttcatttttg
atcaatgatgatgcggaacaagtgagcaagctggatttcccgaatttctggcatcaaggt
aatttaaaactcaaattgacttatcaatttgaaccaggtaccgatgcggacggtgtgaca
gtacatattccattgccattgctcaaccaagtggaaatgaccggctttggctggcaaatt
ccaggcttgcgtgaagaattggtgattgcgctgattaaatcgctgccgaaatcttatcgc
cgtaacttcgtacctgcacctaattatgctcaagcttttttaagtcgtgcggtgccattg
gaaaagccattattagatacgctgatttatgaattgcgtcgtatgactggcgtcaccgta
gaagcggaacattggaattgggaacaaattccaagccatctgaaaatgacgttccgtgtg
gtagatgaaaacggtaagaaaatcgcagaatccatgaatttggatgagctgaaattcaac
ttaaaagatcgtgtgcaggaaagtatttctgctgtggcagatgatggcattgagcaaagt
gggctgcatatttggagttttgcagatttaccacaatgttacgaacaaaaacaacgtggt
tttagcgtcaaagcgttccccgccattgtagatgaaaaagatgccgtagctatcaaactg
tttgaaacagagtttgagcaatcggtggctatgcaacaaggtttgcgtcgtttgttattg
ctcaatgtgccatcaccaattaaatatcttcatgaaaaattgccgaataaggctaaattg
ggtctgtattttactccgttcggtcgcgtattggatttgatcgatgactgtattgcttgt
gcggtggataaactgattgccgattttggcgggtttgtttgggatgaagcaggctttgaa
aaattgcgtgatttcgttcgagaaaatcttaacgaagtgaccgtggatattgcgcagaaa
gtggagcagattcttactctcacttaccaacttaaccaacgccttaaaggcaaaatggat
ttcacgatggcatttgcattatccgacatcaaatcgcaacttgcaggtttggtgtatcaa
ggttttgtgcaaaagagcggttatgatcgcctaccagatttacaacgttatctgcaagcc
attgataaacgtattgataagttggctcaagatgtaaaccgtgatcgtgctgcgatgttg
cgcatacagcaagtacaacaggcttaccaacaattactggctaaactgccaaaatctaaa
cctatttccgatgaagtggcagaaattcgctatatgattgaggaattgcgcgtaagttta
tttgcccagcaattaggtacgaaatatcaaatatcagataaaagaatagcaaatattatt
agtcaatactaa
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