Halopseudomonas aestusnigri: LO767_01190
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Entry
LO767_01190 CDS
T07924
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
haes
Halopseudomonas aestusnigri
Pathway
haes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO767_01190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haes03019
]
LO767_01190
Enzymes [BR:
haes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LO767_01190
Messenger RNA biogenesis [BR:
haes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LO767_01190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UGV31159
LinkDB
All DBs
Position
complement(260612..262249)
Genome browser
AA seq
545 aa
AA seq
DB search
MSFASLGLSDALVRAVAATGYTTPTPVQLQAIPAVLEGRDLMVAAQTGTGKTAGFALPVI
ERLFPAGEPAGKRPGAKQVRVLVLTPTRELAAQVHDSIRAYATELPLKSTCIFGGVGANP
QMKAIAPGLDILVACPGRLLDLVGQKAVDLSQVEVLVLDEADRMLDMGFVHDVKKVIAKL
PAKRQNLLFSATFSKDITDLANKLLDNPARIEVTPPNTTVERINQKVYRVAAGHKRALVA
HLITQGAWEQVLIFTRTKHGANRLAEYLVKNGLPAAAIHGNKSQSARTKALADFKANTLR
ILVATDIAARGLDIDQLPHVINFELPNVSEDYVHRIGRTGRAGRSGEAVSLVSPDEDKLL
RSIERMTRQRIEEGSLEGFEPPAQAELNSDRPERERGERSERPRGQNARSNSNGGARNNR
GQGGQTAKRTSQGQGQSQGQGQGTRANGGNAGNGGKGNGGNGQPRGQRRDDRQRGEQRPH
QQRQRAAGQPRVMPGIHAPEDPVAIERRRQALGNRIEPEVEDRKPAKGKPGGRPQREKPA
LLGPR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccttgggcctgtcggacgcgttggtacgcgccgtggcagccactggt
tacaccacgcccaccccggttcagctgcaagcgattccggctgttctcgaaggccgcgac
ctgatggttgcggcacagaccggtaccggcaagaccgccggttttgcacttccggttatc
gaacgtctattccccgctggcgagcccgccggcaagcgcccgggcgccaaacaggttcgc
gtgctggtacttaccccgacccgtgagctggcagctcaggtgcacgacagcattcgcgcc
tatgctaccgagctgccactcaagtccacctgcatctttggtggcgttggcgccaacccg
cagatgaaagccatcgctcccggcctcgatattctggttgcctgcccgggccgccttctt
gacctggtcggtcagaaggctgtcgatctgtcgcaggtagaggtactggtgctggacgaa
gccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaggtcatcgccaaactg
ccggccaagcgtcagaacctgctgttctccgcgaccttctcgaaagacatcaccgatctg
gccaacaagctgctcgacaacccggcgcgtatcgaagtcacgccgccgaataccaccgtc
gagcgcatcaatcaaaaggtctaccgcgttgctgccggccacaagcgtgcgctggtcgcc
catctgatcacccagggcgcctgggaacaggtgctgatctttacccgcaccaaacacgga
gccaaccgtctggccgagtacctggtcaagaacggtctgccagcggcggcgattcatggc
aacaagagccagagcgcacgcaccaaggcactggccgacttcaaggccaacaccctgcgc
attctggtagctaccgatatcgccgcccgcggcttggacattgatcagctgccccacgtg
atcaacttcgaactgcccaacgtctcggaagactacgtccaccgcatcggccgcaccggc
cgtgccggtcgcagcggcgaagcggtgtcgctggtcagcccggacgaggacaagctgctg
cgttcgattgagcgcatgaccaggcagcgcatcgaggagggctcactggagggcttcgag
ccgccggcccaagccgaactgaacagtgatcgcccggagcgtgagcgtggcgaacgcagc
gagcgcccgcgtggccagaacgcgcgcagcaacagcaatggcggtgcgcgcaacaaccgc
ggccagggtggccagaccgccaaacgcaccagccaaggccagggccaatcgcaaggccaa
ggccaaggcacccgcgcgaacggcgggaatgccggcaacggcggcaagggtaacggcgga
aacggccagccacgcggccagcgtcgcgacgaccgccagcgcggcgagcaacgtccgcat
cagcaacgacagcgcgcagccggccagccacgggtaatgccgggcattcatgctccggaa
gatccggtcgctatcgaacgccgccgtcaggcactcggcaaccgcattgagccggaggtc
gaggatcgtaaacccgccaaaggcaaaccgggtggccgcccgcagcgcgaaaagccggca
ctgctcggcccacgctga
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