Halopseudomonas aestusnigri: LO767_05415
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Entry
LO767_05415 CDS
T07924
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
haes
Halopseudomonas aestusnigri
Pathway
haes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO767_05415 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haes03019
]
LO767_05415 (rne)
03009 Ribosome biogenesis [BR:
haes03009
]
LO767_05415 (rne)
Enzymes [BR:
haes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LO767_05415 (rne)
Messenger RNA biogenesis [BR:
haes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LO767_05415 (rne)
Ribosome biogenesis [BR:
haes03009
]
Prokaryotic type
rRNA processing factors
LO767_05415 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UGV31925
LinkDB
All DBs
Position
complement(1179856..1183053)
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKQVEGRVNIKDVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNSLNVPADMGMIVRTAGLGRSAEELQW
DLDYLLQLWEAIKGASEERKSPFLIYQESNVIIRAIRDYLRQDIGEVLIDSPEVKEEALN
FISQVMPQYASKVKLYEDPVPLFNRFQIESQIETAFEREVKLPSGGSIVIDHTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RESLEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGRGTIRDVESLSLSV
LRLIEEEALKERTAEVRAHVPVPVATFLLNEKRDALAKTEARTRVRVLVLPNPHMDTPHF
DVQRLRDDHESVLNGETSYNATSTIEVEEPAPVSQTRAIVRQEAAVKALSPARPAPTPPA
AVEAVQAAQPNLFKGLIKSLVGLFASEQPAAEPAKQQEQASSEPKRERSSRNADERRNNR
NRRQRGERGERGERAERPERNERSERGNRQDTERKQQPRTERSNEAESTEARNEGGNQQR
RRRRPAPAAAPQADTEQQSSREDSPVQERPQRERRPQQPRPEQTEPVEQIEDQVSAADVA
DESVSAETDAGEGERPKRRSRSSQRRRNNRRRPQAEGTDTESQGDNADAADSAVADSNPD
AASAASIAAVATATANTGDAPAEAKADDEQQAEVTDLQSPVEACLSEAASKAEASIETAV
EAFSQAQPQEASIEAEAKVEAEAKTESQESEAPVESTEAAVSSEPVAVEQPAEEPAPVAQ
VTAEVEPKIEASQQPTAEVPAEAPKVEAVAEQPVQAESSIPALTESGRAYNDPREIRKRQ
LEAKRQAEEEAARAAQVQPEQPAAQEAGVDQPEAPTEAVEQKAAEVEPSQPQQVDLLTDA
AAEQPADAAAAGEAVQADAQVEPSPEQAETEQAPRKPEPTEGDKP
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgcaactcaacccgaagagttgcgtgtcgccctagtagat
ggtcaacgcctctacgatctggatatcgaatccggcgctcgcgagcagaaaaaggccaac
atctacaaaggccgtatcacccgcgtcgaacccagcctggaagccgcctttgtcgacttc
ggctccgaacgacacggctttctcccgctcaaggaaatctcccgcgaatacttctccaaa
caggtcgaaggtcgcgtcaacatcaaagacgttctgaaagaaggccaggaagtcatcgtc
caggtcgacaaggaagaacgcggcaacaagggcgcagccctgaccaccttcatcagcctc
gctggccgctatctggtgctgatgccgaacaacccgcgtgccggcggcatttcccgacgc
atcgagggtgaagagcgcaatgaactgcgcgaagccctgaacagcctcaacgtccctgcc
gatatgggcatgatcgtgcgcaccgcaggccttggccgcagcgccgaagaactgcaatgg
gaccttgactacctcctgcagctctgggaagccatcaagggtgcctccgaagaacgcaag
agcccgttcctgatctatcaggaaagcaatgtcatcatccgcgccattcgtgactatctg
cgccaggacatcggtgaagtgctgattgacagcccagaggtcaaggaagaggccctcaac
ttcatcagccaggtcatgccgcagtacgcgagcaaggtcaagctgtatgaagaccccgtg
ccgctgttcaatcgcttccagatcgaaagccagatcgagaccgcattcgagcgcgaagtg
aagctgccgtccggcggctctatcgtaatcgaccataccgaagccctggtctccatcgac
atcaactccgcccgcgcaaccaagggtggcgatatcgaggaaaccgcactgcagaccaac
ctggaagcggctgaagagatagcccgccagctgcgcctgcgcgacattggcggcctaatt
gttatcgacttcatcgatatgacgccggccaaaaaccagcgcgccgttgaggaacgcgtt
cgcgagagcctggaagccgatcgcgcccgcgttcaggttggccgcatctctcgctttggc
ctgctggaaatgtctcgtcagcgcctgcgtccgtcgctgggtgaaaccagcggtatcgtc
tgccctcgctgtaatggccgcggcaccattcgcgatgtcgaatcgctgtcgctgtcggtt
ctgcgcctgatcgaagaagaagccctgaaggaacgcacagccgaagtccgcgcccacgtg
ccggtaccggttgccaccttcctgctgaacgaaaagcgcgatgctctggccaaaaccgaa
gcacgcacccgcgtgcgcgtactggttctgccaaacccgcacatggacaccccgcatttc
gatgtccagcgcctgcgcgacgaccacgaatctgtcctgaacggtgaaaccagctacaac
gccaccagcacgattgaagtggaagagccggctccggttagccagacccgcgccatcgta
cgccaggaagccgccgtcaaggcactctcccctgcacgccccgcgccgactccgccggct
gccgttgaagcggttcaggccgcccaacccaatctgttcaagggcctgatcaagagcctg
gtcggcctgtttgccagtgagcagcctgcggccgagcctgccaaacagcaggagcaagcc
agcagcgaaccgaagcgcgagcgcagcagccgcaacgccgacgagcgccgcaacaaccgt
aaccgccgtcagcgcggtgagcgcggtgagcgcggtgagcgtgcagaacgccctgaacgc
aacgaacgcagcgagcgcggcaaccgtcaggacactgagcgcaaacaacagccgcgcacc
gagcgcagcaacgaagcagaaagcacagaagcgcgcaacgagggtggcaatcagcagcgc
cgccgtcgtcgtccggctcctgctgctgcgccacaggcggatacagagcagcagagcagc
cgcgaggacagccccgtccaggagcgcccgcagcgcgagcgtcggccgcaacagccgcgc
cccgagcagactgagccggtcgagcagatcgaagatcaggtcagcgccgccgatgtggcc
gacgaaagcgtcagcgcggaaaccgacgccggcgaaggtgaacgccccaaacgtcgctct
cgcagcagccagcgccgccgcaacaaccgtcgtcgtccgcaagccgaagggaccgatacc
gagagccagggcgataacgcagacgcagcagactcagccgtagctgacagtaacccggac
gcagcaagcgcagccagcattgcggcagtagcgacagcaaccgccaataccggggacgca
ccggccgaggccaaggctgatgacgagcagcaggccgaggttaccgacctgcaatcaccg
gtcgaagcctgcctgagtgaagcggcaagcaaggcagaggcctccatcgagacagccgtt
gaagccttcagccaggctcagccgcaggaagccagcatcgaagctgaagccaaagtcgaa
gctgaggccaagaccgagagccaggagagcgaagcaccggtagaaagcaccgaggcagcg
gtctccagcgagccggtagcggtcgaacagccggccgaagagccagcgcctgtcgcgcag
gtaactgcagaggtggaacccaagatagaagccagccagcagccgacagcagaagtacct
gcagaagcgcccaaggtcgaagccgtcgccgagcagccggttcaggccgaaagcagcatc
cccgccctgacagagagcggccgcgcctacaacgacccacgcgagattcgcaagcgccag
cttgaagccaagcgtcaggccgaggaagaagcggccagggccgcacaggtacagcctgag
caacctgccgcgcaggaagccggtgtcgatcagcctgaagcgccgacagaggctgtcgag
caaaaggctgcagaggtagagccgagccagcctcaacaggttgatctgctcaccgatgct
gctgccgagcaacctgcagatgctgcagctgccggcgaagccgtgcaggccgacgctcag
gtagagccatcgccagaacaggccgagacggaacaagcgccgcgcaagcctgagccgaca
gagggcgacaagccctga
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