Halopseudomonas aestusnigri: LO767_06140
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Entry
LO767_06140 CDS
T07924
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
haes
Halopseudomonas aestusnigri
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haes03016
]
LO767_06140 (rnd)
Enzymes [BR:
haes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LO767_06140 (rnd)
Transfer RNA biogenesis [BR:
haes03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LO767_06140 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UGV32060
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All DBs
Position
1333502..1334650
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AA seq
382 aa
AA seq
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MTPALTQPVMIDDDAELARCCDQWRRLPFVAVDTEFVRTETFYPIAGLIQIGDGERATLI
DPLGIGDWTPFVALLEDASVVKVLHACSEDLEVFSRLCGALPAPLFDTQLAAAFLGMDFS
MGYSRLVSALLDIDLPKDETRSDWLQRPLSPAQIEYAARDAQHLAELYQILAPRIAQAGV
AEWLFADTAEQVAASGQMIEPELAYLQVKQAWRLKPAELAILRPLAAWRERESRARDIAR
NRLLRERTLVPLAQRQPDTLQALSRIEDMHPRTVRHEGETILQLIREGRAVAPSDYPEVL
PEPLPSAANRLLKALRKVGQDEAEKRGIAVEIMLRKKVLEAMVRTGYPSGPYRLPDELTG
WRRELMGEALLKAANGAVEVVE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgcgctaacgcaacccgtaatgattgatgatgacgccgagttggcacgctgc
tgcgaccagtggcgtcggctgcccttcgttgccgttgataccgaatttgttcgcaccgag
acgttttacccgattgccggtctgatccagattggcgatggcgagcgcgccacgctcatt
gatccgctaggtattggcgactggacgccctttgtcgcgctgcttgaggatgcttctgta
gtcaaggtcctgcatgcatgcagtgaggatcttgaggtcttttccaggctgtgtggcgcg
ttgcccgcgccgctgttcgatacccagcttgctgcagcctttctcggcatggacttttcc
atgggctactcccgactggtcagcgcgctgctggatatcgatctgcccaaggatgaaacc
cgctccgactggctgcagcggcccctgagcccggcccagattgagtatgccgcccgtgat
gcccagcacctggcagagctctatcagattctggcgccgcgtatcgcccaggccggcgtg
gccgagtggctgtttgccgacaccgctgagcaggtcgcagcttcaggtcagatgattgaa
ccagagctggcttatctgcaagtcaagcaggcatggcggctgaaaccggccgagctggcg
atcttgcgcccgctggcggcctggcgcgagcgcgagtccagggctcgcgacatcgcccgt
aaccggttactgcgtgaacgcacgctggtaccgctggcgcagcgccagcccgatactctg
caggcgctgtcgcgcattgaggacatgcatcctcggaccgtgcgccacgagggtgaaacc
atcttgcagctgattcgcgagggccgcgcagtggctccctcagactatcccgaggtgctg
cccgagccattgccatcggctgccaatcggctactcaaggcgttgcgcaaggttgggcag
gatgaagccgagaagcggggtatcgcagtcgagatcatgctgcgcaagaaagtacttgaa
gccatggtgcgcacgggttatccctccggcccttatcgactgccggatgagttgactggc
tggcgtcgggaactgatgggtgaagcattgttgaaagccgccaacggtgcggtggaggta
gttgaatga
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