Halopseudomonas aestusnigri: LO767_11545
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Entry
LO767_11545 CDS
T07924
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
haes
Halopseudomonas aestusnigri
Pathway
haes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO767_11545 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haes03019
]
LO767_11545 (rnr)
03016 Transfer RNA biogenesis [BR:
haes03016
]
LO767_11545 (rnr)
Enzymes [BR:
haes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LO767_11545 (rnr)
Messenger RNA biogenesis [BR:
haes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LO767_11545 (rnr)
Transfer RNA biogenesis [BR:
haes03016
]
Prokaryotic type
tRNA degradation factors
LO767_11545 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
LexA_DNA_bind
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
UGV29648
LinkDB
All DBs
Position
complement(2513328..2515850)
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AA seq
840 aa
AA seq
DB search
MTKDWSHLDPEARREAEKYDNPIPSRELILHLLESRGAPATRAQLQQEFGLSDEDSIEAL
RRRLRAMERDGQVIYTRRGAYAPVDKLDLIPGRIQGHRDGFGFLIPDDSSGDIFLGPSQM
RLVFDGDRALVRITGVDRRGRNEGAVVEVISRAHEILVGRYYEEDGIGYVVADNARINQD
VLIAPTAKGGVKHGQYAEVRITHWPTPSRQAQGEVIEVVGDYMAPGMEIEVALRSYDIPS
EWPEAVLKEAALLKDHVVEKDKQKRVDLRHLPLVTIDGEDARDFDDAIYCEPHKASGWRL
FSGGWKLYVAIADVSHYVPLGSALDEEAELRGTSVYFPSQVIPMLPEELSNGLCSLNPHV
DRLAMVCEMTVSKSGELTDFEFYEAVIHSHARLTYNKVSSMLEHPRSREGKALRDEYSEV
VAHLENLYELYKALAKARQGRGAIDFETTETRMVFGDDRKIVEILPTTRNDAHKIVEECM
LCANVATARFLQELELPGLYRVHDSPQAEKIERLREFLNSLGLSLTRKKGDPTPEDYAAV
LARVQGRPDAQLIQTVMLRSLSQAVYSPDNAGHFGLNYEAYTHFTSPIRRYPDLLVHRAI
RSVIRSRRNTSLVRRAGAGVIPKAKIYPYDHQRLVELGEQCSQNERRADEATRDVVSWLK
CEFMQDRVGDSFDGLVTAVTSFGLFVELTDIYVEGLLHITALPADYYEFDAVHHSLIGER
SGRRFRLGDSVRVQVARVDLDDRKIDFEMAADTPQAPVERQVSASRAMREKLLADARRAA
GEVPPRGNAPRKGRSDASTGKPGGGARSKTARPAKAPAGGKADGKGAAPTSRGPRKRKSR
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaggactggagtcatctcgacccggaagctcggcgcgaagccgaaaagtacgat
aaccccattccgagccgcgaactgatcctgcatctgctggagtcccgtggcgcgcctgcg
acccgtgcgcagctgcagcaggagttcggcctgtccgatgaagacagcatcgaggcgctg
cgccgccgtctgcgcgccatggagcgcgacgggcaggtaatctatacccgtcgcggcgcc
tatgccccagtcgacaagctggatctgattcccggacgtatccaggggcatcgtgatggc
ttcggtttcctgattcccgacgacagcagcggtgatatttttctcggcccgtcgcaaatg
cgcctggtcttcgacggtgatcgcgcgttggtgcgcatcactggggtcgaccggcgcggg
cgcaacgaaggtgcggtagtcgaagtgatctcccgcgcgcacgaaattctggttggccgg
tactacgaggaagacggcataggctatgtcgtcgccgataacgcccgtatcaatcaggac
gtgctgattgctcccaccgccaagggcggtgtaaagcatggtcaatatgccgaggtacgc
atcacccactggccgaccccgagtcgtcaggcccagggtgaggtcattgaggtggtgggc
gactatatggcgcccgggatggaaattgaagttgcgctgcgcagttacgatatccccagc
gagtggcccgaggcggtgttgaaagaggccgctctgctgaaagatcatgtggtcgaaaag
gacaagcagaagcgggttgatctgcgccatctgccgctggtcaccattgacggcgaagat
gcgcgtgactttgacgatgcgatttactgtgagccgcataaggccagcggctggcgtctg
ttctcgggtggctggaagctctatgttgccattgcggatgtctcgcactacgtgccgctg
ggctcggcgctggatgaagaggccgaactgcgaggtacctcggtctacttccccagtcag
gtcattccgatgctgcctgaggagttgtccaacgggctgtgctcgttgaatccgcatgtt
gatcgccttgccatggtctgcgaaatgaccgtgtcgaagagtggcgagctgactgacttc
gagttctacgaggcggttatccactcgcatgcgcgcctgacctataacaaggtctccagc
atgcttgaacatccgcgcagtcgtgaaggcaaggcgctgcgtgacgagtattccgaggtg
gttgcccatctggaaaacctgtacgagctctacaaggccctggccaaggcgcgccagggg
cgcggggcgatcgatttcgaaacgaccgaaacgcgtatggtgtttggagatgatcgcaag
atcgtcgagattctgccgacaacgcgcaatgatgcacacaagattgtcgaggaatgcatg
ctgtgcgccaacgtggcgactgcgcgcttccttcaggagcttgagctgccggggctgtat
cgtgtgcacgacagtccgcaggcggaaaaaatcgagcgtttgcgcgagtttctcaactcg
ctcggcctgagtctgacccgcaagaagggtgatccgacgccggaagactatgcagcagtg
ctcgcgcgcgtacagggtcgtcccgatgcccagttgattcaaacggtgatgctgcgctcg
ctcagccaggcggtgtacagcccggacaatgccgggcactttggtctcaactacgaggcc
tatacccatttcacctcgcccattcgtcgctatccggacctgctggtgcatcgcgccatt
cgcagtgtcatccgctcgcgtcgtaatacctctctggtacgtcgcgccggcgccggcgtg
attccgaaggcgaaaatctatccctatgaccatcagcgtctggtcgagctgggcgagcag
tgttcccagaatgagcggcgtgccgacgaggcgactcgggatgtggtgagctggctcaag
tgcgagttcatgcaggatcgcgtcggcgacagttttgatggcttggttactgcggtcacc
agctttgggttgttcgtcgagctcacagatatttatgtggaagggttgctgcacattacg
gcattgcctgccgactactacgaatttgatgcggtgcatcactcgctgatcggcgagcgt
tccggtcgccgcttccgtttgggcgactcggtacgggttcaggtggccagagttgatctt
gatgatcgcaagatcgacttcgagatggcggcagatacgccacaggcccctgtggaacgt
caggtatcggccagtcgcgccatgcgtgaaaagctgctcgctgatgcccgtcgtgccgcc
ggagaggtgccgccgcgtggcaatgcgccgcgcaaggggcgctccgacgccagcaccggc
aagccgggagggggggcgcgtagcaagactgctcggcccgcaaaggcgcctgctggtggc
aaggcggatggcaagggtgcggcgccgacaagtcgcggcccgcgaaagcgcaagtcgcga
tag
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