Halopseudomonas aestusnigri: LO767_12725
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Entry
LO767_12725 CDS
T07924
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
haes
Halopseudomonas aestusnigri
Pathway
haes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LO767_12725 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haes03019
]
LO767_12725 (rhlB)
Enzymes [BR:
haes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LO767_12725 (rhlB)
Messenger RNA biogenesis [BR:
haes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LO767_12725 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
UGV29864
LinkDB
All DBs
Position
2762453..2763985
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AA seq
510 aa
AA seq
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MLKALKKLISKPEEPAPKAADTTPRQAAEPTPAPLQNDSANRERKPRNRDRKRLAKPPAT
PVKPWSINDFQVPPAEGKTRFHDFPLPDSLMHAIQDQGFSYCTPIQAAVLGSTLRGHDAI
GRAQTGTGKTAAFLVSTITQLLETPPPDERFMGEPRALIIAPTRELVMQIASDAEGLTKH
CPLNVMTFVGGMDFDKQLKQLELRYCDILVATPGRLLDFCNRGEVHLDLIEVLILDEADR
MLDMGFIPQVRQIIRQTPRKGDRQTLLFSATFSDDVMNLARQWTHEPAVVEIEPERPASE
NVTQKVYAVSGRDKYKVLYNLITQLDLDRVMVFANRKDEVRRVQERLMRDGINAAQLSGD
VPQQKRVRTLENFKTGKLRVLVATDVAGRGIHIDGISHVVNYTLPEDPEDYVHRIGRTGR
AGAKGTSISLAGEDDAFQVPPIEELLGNKLECVPPEEHLLKPVPKREQSAEEKAATDANE
AEQAEAAAAARRRSAGSNSRRGGGRPQGRH
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgctcaaagcactgaaaaagctgattagcaagccagaagagccggcgccgaaagcggcc
gacaccacaccccgtcaggcagcagagcccactcccgcgcccctgcagaacgatagcgca
aaccgcgaacgcaagccgcgcaaccgtgatcgcaagcgcctggccaaaccacctgcgacc
ccggtcaagccctggagcatcaatgactttcaggttccaccggccgaaggtaaaacccgc
ttccacgacttcccgctgcctgacagcctgatgcacgccattcaggaccaggggttcagc
tactgcaccccgattcaggccgccgtactgggcagcaccctgcgcggccacgacgcgatc
ggccgggcccagaccggcactggcaaaaccgctgccttcctggtctccaccatcacccaa
ctactggaaacaccgccgccggacgagcgctttatgggcgagccacgggcgctgatcatc
gcaccgacccgcgaactggtcatgcagattgccagcgacgccgagggcctgaccaagcac
tgcccgctgaacgtgatgactttcgtcggtggcatggacttcgacaagcagctcaagcag
ctggaactgcgctattgcgacatcctggtcgccacacctggccggctgctcgacttctgc
aatcgcggcgaggtgcacctggatctgatcgaagtgctgatcctcgacgaagccgatcgc
atgctcgacatgggctttatcccgcaggtacgccagatcatccgccagacaccgcgcaag
ggcgaccgccagaccctgctgttctcggccaccttcagcgacgacgtgatgaacctcgcc
cgtcagtggacgcacgaaccggccgtcgtcgagatcgagcccgagcgtccggcctcagag
aacgtgacccaaaaagtctatgctgtcagcggccgcgacaagtacaaggtactctacaac
ctgatcacccagctggatctggaccgggtcatggtgtttgccaaccgcaaggatgaagtg
cgccgggtgcaggagcgcctgatgcgcgacggcatcaacgccgcccagctgtccggcgat
gtgccgcagcaaaagcgtgtgcgcaccctggagaacttcaagaccggcaagttgcgggtg
ctggtcgctaccgatgtggctggccgcggcattcacatcgatggcatcagccacgtggtg
aactacaccctgccggaagacccggaagactacgtccaccgcatcggccgcaccggccgc
gctggcgccaagggcacttccatcagtctggcaggtgaagacgacgccttccaggtgccg
ccgatcgaagagctgctgggtaacaagctggagtgtgtgccgccggaagagcacctgctc
aagccggtgcccaagcgcgagcagagcgctgaagaaaaagccgctactgacgccaatgaa
gccgagcaggctgaagccgctgcggcagcccgccgtcgctcggctggcagcaacagccgc
cgcggtggcggtcgtccacagggtcgccactga
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