Halopseudomonas aestusnigri: LO767_17780
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Entry
LO767_17780 CDS
T07924
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
haes
Halopseudomonas aestusnigri
Brite
KEGG Orthology (KO) [BR:
haes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haes03019
]
LO767_17780
Messenger RNA biogenesis [BR:
haes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LO767_17780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
TraI_2
HDOD
MIOX
Motif
Other DBs
NCBI-ProteinID:
UGV30779
LinkDB
All DBs
Position
complement(3818311..3819249)
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AA seq
312 aa
AA seq
DB search
MNNSVPSTYSNKDADAFWLTGCLETQQAYQVSPLKSCIFLVLENLAGLHEVLAALDNHPG
SWPTNGLVAVSMLVTAHGGFLTVEDQKLLTTHAFQSLSHLPASKVGSITTVMDVERWIDS
CPYPTLQRFAYQVLGEPNIGCRFFSYPASANHHHCYPGGLAEHSLEVAQSVYAVSSSFSE
HERWLAALAGLLHDLGKVRSMQPDGRRTETGYLVSHELLGYELALPALNTLEKEWPDGAN
GLRYLFEWLIKPKQQRPVLPVALAIKQADIMSAAANNRQKVFSDKPVWQTFARCDGPGPE
STFWLPRPPHAD
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgaacaactcagtgccatccacctattcaaataaagatgcagatgccttttggttgact
ggctgcctggaaactcaacaggcctatcaggtatcgcctctaaaatcctgtattttcctc
gttttggaaaaccttgcaggactccatgaggttctagcagccctagataaccacccgggg
tcatggccaaccaatggattagtagccgtctcaatgctcgtcactgcccatgggggcttt
ttgaccgttgaagatcagaagctattaacaacgcatgcttttcaatcactcagccatcta
cccgccagcaaagtgggctcaatcacgaccgtgatggacgttgagcggtggatagacagc
tgcccatacccaacgctgcaacgcttcgcctatcaggtacttggagagcccaatattggc
tgtcgattttttagctacccagcgagcgctaaccaccaccactgctatccgggtgggttg
gctgagcacagcctggaggtggctcaatcagtatatgccgtaagcagcagcttctctgag
catgagcgctggctggccgcactcgctggcctgctccatgacctcggcaaagtacgaagc
atgcagccagatgggcgacgaacagaaactggatatttggtgagtcacgagctgctggga
tatgagctggctcttccggcgctaaacacgctggaaaaagaatggccagacggtgccaat
gggcttcgctacctgtttgagtggctgatcaagccaaagcagcaacgaccagtattgccc
gttgccctggccatcaagcaggcagacatcatgagtgctgccgccaataaccggcaaaaa
gtcttcagtgataagcctgtctggcagacctttgcccgatgcgatggacctggccccgaa
agtaccttctggctgccaaggccaccgcatgctgactaa
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