KEGG   Halomonas sp. SF2003: C8233_04355
Entry
C8233_04355       CDS       T05423                                 
Symbol
icmF
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
haf  Halomonas sp. SF2003
Pathway
haf03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:haf00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    C8233_04355 (icmF)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:haf02044]
    C8233_04355 (icmF)
Secretion system [BR:haf02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C8233_04355 (icmF)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related OmpA AAA_16 MMR_HSR1 HSCB_C MARVEL
Other DBs
NCBI-ProteinID: AVV33013
LinkDB
Position
complement(1071562..1074054)
AA seq 830 aa
MNKLKLHVLKYYILKYRPYWLGVLFFLGIFLIWGVGVSLGFPSLDSLLVGILAFLVASAF
YLLLLYRGVGERQDVESLLIQNADDAVLSAAPPDREEVSLLRERLLAALDRMRKSASEKR
SGWFTRQGDVLYTLPWYLVIGQPAVGKSTLVSRSGLDFPFAERESARVAGIGGTRHCDWF
FSSEAVLLDTAGRYVSSEEEVGKWRAFLDMLRRYRPRQPLNGLIVAVSIDEVLQNRHDVE
ALAHQLRERIQESYERLGAALPIYLVFTKSDHIPGFREFHAQLAPAQRDEVLGMSFPHQG
YAEADWRTRFSEAMTRLVARCAGTGERCLVEGDIVRTREAPAAVEFPRELEALAPHLTDF
VTELLKVNPYQAAPLLRGFYFTSALSEGQASTAAHGRNVASRFAVTERHAPGHQDGKPLF
VSGLFSRVVLPDQHLVGLYGGANLQRRRQLRWVWLALALAAVMCLAWAVSFTANTRELGA
LDQALDAAYEEDAGEPNAYAQWATLDALRDSAARYDSRHHESGVPWSLGFGLYEGETLEP
ALRDVYFGALRQMMLVPIASNLNQSLFMLPTISVHDREDGPRETDIHVPGVEDHAQPRDN
SAQALADFGNNTLKTYLSLSRTPREDIEPEWLRSEMPVYWYPAITQGEDVPRDSRDLEYA
SRQVNFYAQQVVRPDVPRLEDNTFLVSSSRNYIDGLLDRSLSTVETITLESDTLFAFGRA
DYSGLQGEGQRQLNAIAERLSNTPNLGRITITGHADPIGSATANHRISLQRAETVRTYLV
GKGLPGELIGAEGAGSDRPLVKCDGEMSRTDKIACLAPNRRVEIEVRALN
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgaacaagctaaagctccacgttctcaagtactacatcctcaaataccgcccgtattgg
ttgggcgtgctgttcttcctgggcatcttcctgatctggggcgtcggcgtgagcctgggc
ttcccgtcactggatagcctgctggtcggcattctggcattcctcgtcgcctccgccttc
tatctgttgctgctctaccgtggggtgggcgagcgtcaggatgtcgagtcgttgctgatc
cagaacgccgatgacgccgtgctcagtgccgcgcccccggaccgcgaggaagtcagcctg
ctgcgcgagcgactgctggcggcgctggaccgcatgcgcaagagtgccagcgagaagcgt
agtggctggttcacccgtcagggggatgtcctctatacgctgccctggtatctggtgatc
ggtcagcctgcggtgggcaagagcacgctggtctcgcgctcggggctggatttccccttc
gcggagcgcgaaagcgcacgtgtcgcgggcatcggtggcacccgtcactgtgactggttc
ttcagcagtgaggccgtgctgctggataccgcagggcgttacgtcagctccgaggaggaa
gtcggcaagtggcgtgccttcctcgacatgctgcgtcgctatcgtccgcgtcagccgctc
aatgggttgatcgtcgcggtcagcatcgatgaagtgctccagaaccgccatgacgtcgag
gcactggcgcatcagctgcgcgagcgcatccaggaaagctacgagcgtctcggtgcggct
ctgcccatctatctggtgttcaccaagagtgatcacatcccgggctttcgcgagttccat
gcgcagctggcgccggcacagcgcgatgaagtgctgggcatgagtttcccgcaccagggc
tatgccgaggcggattggcgtactcgtttcagtgaggcgatgactcgtctggtggcacgt
tgtgcgggtaccggtgagcgctgtctggtggagggtgacatcgtgcgcacccgcgaggca
ccggcggcggtggaattcccgcgtgagctggaagcgctagctccgcaccttaccgatttc
gtcacggaactgctcaaggtcaatccctatcaggcggcgccgctgctgcgcggcttctat
ttcaccagcgcgctctccgaggggcaggccagcacggcagcccacggacgtaatgtggcg
tcacgcttcgccgtcaccgagcgtcatgcgccgggccatcaggatggcaagccgctgttc
gtctcggggctgttctcgcgggtggtgctgccggaccagcatctggtcggcctttatggc
ggtgccaatctccagcgtcggcgtcagctgcgttgggtgtggctggcactggcgctcgcc
gcggtcatgtgcctggcgtgggcggtgtccttcaccgccaatacccgggagctgggggcg
ctggatcaggcattggatgccgcctatgaggaagatgccggcgagccgaatgcctatgcc
cagtgggcgacgctggatgccctgcgtgacagcgcggcccgctacgacagccgtcatcac
gagagtggcgtgccctggtcgctcggcttcgggctctatgaaggcgagacgctggaaccc
gcactgcgggatgtctatttcggcgcgctgcgccagatgatgctggtgccgatcgccagc
aacctcaaccagtcgctgttcatgctgccgaccatcagcgtgcatgaccgcgaggatggc
ccgcgcgagaccgatatccatgtcccgggagtcgaggaccacgcccagccgcgtgacaac
tcggctcaggcgctggcggacttcggcaacaacaccctgaagacctacctgtccctgtcg
cgcacgccgcgcgaggacattgaaccggaatggctgcgcagcgagatgccggtctactgg
tatccggccatcacccagggggaggatgtgccgcgcgatagccgtgatctggaatatgcc
agccggcaggtcaacttctatgcccagcaggtcgtgcgcccggacgtgccgcgtctggaa
gacaacaccttcctggtgtcctccagtcgcaactacatcgatggtctgctggaccgctcc
ctgagcaccgtcgagaccatcacgctggagtccgacaccttgttcgccttcgggcgtgcg
gattactcggggctgcagggcgaggggcagcgtcagttgaatgccatcgccgagcgactt
tccaatacgccgaacctggggcgcatcaccatcaccggccacgccgacccgatcgggtcc
gccactgccaaccatcggatctcgctgcagcgcgccgagaccgtgcgcacctatctggtg
ggcaaggggctgccgggtgagctgatcggcgcggaaggggccggcagtgatcgtccgctg
gtcaagtgcgatggcgagatgtcgcgcaccgacaagatcgcctgtctggcgcccaatcgt
cgtgtcgagattgaagtgcgtgcgctgaactga

DBGET integrated database retrieval system