KEGG   Halomonas sp. SF2003: C8233_04405
Entry
C8233_04405       CDS       T05423                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
haf  Halomonas sp. SF2003
Brite
KEGG Orthology (KO) [BR:haf00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:haf02044]
    C8233_04405 (tssC)
Secretion system [BR:haf02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C8233_04405 (tssC)
SSDB
Motif
Pfam: VipB VipB_2 SurA_N_3
Other DBs
NCBI-ProteinID: AVV33022
LinkDB
Position
complement(1088284..1089786)
AA seq 500 aa
MSDNRSESATVAPQAQDAVFAPQSSLLDSIISESRVARSETERTRARDLIEELVAQVLDG
EVMPSKDLIAVLDARIAEIDAMLSEQMNEVMHASEFQKLESSWRGLRYLVDQTETGSNMK
IQMLNATKKELVRDLKSAPEFDQSALFKKVYEEEYGTFGGAPFGMLVGDYEFSRSPEDIY
LLEQISHVAASAHAPFISAASPELFGWDSFTEMSGPRDLSKIFDTVEYAKWKSFRNSEDA
RYVGLTLPHVLGRLPYGPDTTPVEEFNFVENVDGREHNKYLWMNAAYAMGSRVTDAFANY
GWCVAIRGVEGGGLVENLPTHTFQTDDGEVALKCPTEIAVTDRREKELADLGFIPLVHCK
GTDYAAFFGTQSAQKQKTYNTDVANANARLSSQMQYIFATSRIAHYMKAIMRDKVGSFAS
RTSVERYLNDWLSQYVLLDDNASQEAKAQFPLREARVEVAEVPGKPGVFKAVTFLRPHYQ
LDELTASLRLVAELPQSTRS
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgagtgacaatcgtagtgaatcagccacagtggcgccgcaagcgcaggatgccgtcttc
gcgccgcagtcttccttgctcgacagcatcatctccgagagccgcgtggcgcgctccgag
actgaacgcacccgtgcgcgcgacctgatcgaagagctggtcgcccaggtgctggatggc
gaagtcatgcccagcaaggacctcatcgccgtgctggatgcgcgtatcgccgagatcgac
gcgatgctctccgagcagatgaatgaagtcatgcacgccagtgagttccagaagctggaa
tcctcctggcgcggtctgcgctatctggtcgatcagaccgagaccggcagcaacatgaag
atccagatgctcaacgccaccaagaaggaattggtgcgtgacctgaaatcggcgccggag
ttcgatcagagcgcgctgttcaagaaggtctacgaagaagagtacggcaccttcggtggt
gcgccgttcggcatgctggtcggcgattacgaattctcgcgcagcccggaagacatctat
ctgctggagcagatctcccacgtggccgcctcggcgcacgctcccttcatctccgcggcg
tccccggagctgttcggctgggactccttcaccgagatgagcggtccgcgtgatctgtcc
aagatcttcgataccgtcgaatacgccaagtggaagtccttccgcaactccgaagatgcg
cgctacgtcggcctgacgttgccgcacgtgctgggacgtctgccgtatggcccggacacc
acgccggtcgaggaattcaacttcgtcgagaacgtcgatggccgcgagcacaacaagtat
ctgtggatgaacgcggcgtacgccatgggctcgcgcgtgaccgacgccttcgccaactac
ggctggtgtgtcgccattcgcggtgtcgaaggcggtggcctggtcgagaacctgccgacc
cacaccttccagaccgacgatggcgaagtggcgctgaagtgcccgaccgagatcgccgtg
accgatcgtcgcgagaaggagctggcagacctgggcttcatcccgctggtgcactgcaag
ggcacggactacgccgccttcttcggcacccagtccgcccagaagcagaagacgtacaac
accgatgtggccaacgccaacgcgcgcctgtcctcgcagatgcagtacatcttcgccacc
tcacgcatcgcgcattacatgaaggcgatcatgcgtgacaaggtcggcagctttgcctcg
cgtaccagtgtcgagcgctacctgaacgactggctgtcccagtacgtcctgctggacgac
aacgccagccaggaagccaaggcgcagttcccgctgcgtgaagcacgtgtcgaagtcgcg
gaagtcccgggcaagccgggtgtcttcaaggccgtgaccttcctgcgtccgcactaccag
ctggatgaactgaccgcctcgctgcgcctggtcgcagagctgccgcagtccactcgcagc
tga

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