Halomonas sp. SF2003: C8233_06855
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Entry
C8233_06855 CDS
T05423
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
haf
Halomonas sp. SF2003
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haf03032
]
C8233_06855 (topA)
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_06855 (topA)
Enzymes [BR:
haf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C8233_06855 (topA)
DNA replication proteins [BR:
haf03032
]
Prokaryotic type
DNA Topoisomerases
C8233_06855 (topA)
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C8233_06855 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AVV33438
LinkDB
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Position
complement(1685211..1687853)
Genome browser
AA seq
880 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTSGSGKQATDPKERARQAAETR
KMSPEVKAAHKAQKAKTQLIRRMGVDPENGWEAHYEILPGKEKVVSELTRLAEKADTIYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKKAITAAFDEPGELKMDRVHAQQAR
RYLDRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHAELAA
ASGEAIRFELARQDGKAFRPTSEKETMDRIAALRTAKLAITNREDKPTRSKPNAPFITST
LQQAASGRLGFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVATARDFISEEYGSNYL
PEAANVYSSKEGAQEAHEAIRPSEVSRRATDLAGMERDAERLYELIWRQFVACQMLPAEY
LSSTLTIEVDGYELRAKGRVLKFDGYTRVMKPMGKKEEDQSLPDLAIGEKLDLVELQPLQ
HFTKPTARYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVALENRRFYAEKLGDIVTD
RLSESFKDLMDFGFTARMEDYLDEVANGGRNWRELLDTFYAEFKAELDHAQSEEGMRPNQ
PVPTDIACPTCGREMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGDEAVAADAGEDA
ETDALRAKRRCPICATAMDSYLIDEQRKLHVCGNSPDCVGHEVEEGQFRIKGYDGPVIEC
DKCGSDMQLKTGRFGKYFGCTNENCKNTRKLLKSGEVAPPKMDPIPMPELACVKVEDHYV
LRDGASGLFLAASQFPKNRETRPPLVKELKAHADELPEKYHFILEAPDQDPDGRPAQIRF
SRKVKAQYVMTDEEGKATGWKATYDNGRWVVEDKRKGAKS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtgatcgtcgagtcgcccgccaaggccaagaccatcaacaagtat
ctcggcaacgacttcgtggtgaagtcgagtgtcgggcacatccgcgacctgccgaccagc
ggaagcggcaagcaggccaccgaccccaaggaacgtgcccgtcaggcggcggagactcgc
aagatgtcgcccgaggtcaaggcggctcacaaggcgcagaaggccaagacccagttgatc
cgccgcatgggggtcgacccggagaatggttgggaggcgcattacgagatcctgcccggc
aaggaaaaggtcgtttccgagctgacgcgtctggccgagaaagccgacaccatctatctc
gcgacggatctggaccgcgaaggtgaggcgattgcctggcacctgcgcgagaccatcggt
ggcgacgattcgcgttacaagcgcgtggtgttcaacgagatcaccaagaaggcgatcacg
gcggccttcgatgagccgggcgaactgaagatggatcgcgtgcatgcccagcaggcacgc
cgctatctggatcgcgtcgtcggcttcatggtctcgccgctgctgtgggccaaggtcgct
cgtggcctgtctgcagggcgtgtgcagtcggttgccgtgcgtctgatcgtcgagcgtgag
cgcgagatccgcgccttcatccctgaagagttctgggatgttcacgctgagctggccgcc
gccagtggtgaagcgatccgtttcgagctggcgcgtcaggatggcaaggccttccgtccg
accagcgagaaggagacgatggatcgcatcgcggcgctgcgcacggccaagctcgcgatc
accaatcgtgaagacaagccgacgcgctccaagccgaacgcaccgttcatcacctcgacc
ctgcagcaggcggccagtggtcgtctcggcttctcggtcaagaagaccatgatgatggcc
cagcgtctctacgaggcgggttacatcacctacatgcgtaccgactcgaccaatctgtcg
gcggacgcggtggctacggcgcgcgacttcatcagcgaagaatacggcagcaactacctg
ccggaagcggccaacgtctactccagcaaggaaggtgcccaggaagcgcacgaagcgatt
cgtccttccgaagtgtcgcgccgcgccaccgatctcgccggcatggagcgtgacgccgag
cgcctgtatgagctgatctggcgtcagttcgtggcctgtcagatgctgccggccgaatac
ctgtcctccacgctgaccatcgaagtggatggctacgagctgcgcgccaagggtcgtgtg
ctcaagttcgacggctacacgcgtgtcatgaagccgatgggcaagaaggaagaggaccag
tcgctgccggacctcgccatcggcgagaagctggacctggtcgagctgcagccgctgcag
cacttcaccaagcccacggcgcgttacaccgaggccagcctggtcaaggagctggagaag
cgcggtatcggtcgtccgtccacctatgccgccatcatctccaccatccaggaccgtggc
tacgtggcgctggaaaaccgtcgcttctatgccgagaagctgggcgatatcgtcaccgat
cgcctgagcgagtccttcaaggacctgatggacttcggcttcacggcgcgcatggaagac
tatctcgatgaggtggccaacggcgggcgcaactggcgcgagctgctggacaccttctac
gccgagttcaaggccgaactggaccacgcccagtccgaagagggcatgcgtcccaaccag
ccggtgccgacagacatcgcctgcccgacctgtgggcgtgagatgcagattcgcaccgcc
tcgaccggggtcttcctggggtgttccggctacaacctgccgcccaaggagcgctgcaag
accaccatcgatctgctgccgggcgatgaggccgtggcggccgatgccggtgaagatgcc
gagacggatgcgctgcgcgccaagcgtcgctgcccgatctgtgccaccgcgatggacagc
tacctgatcgatgagcagcgcaagctgcacgtctgcggcaatagcccggactgtgtcggt
cacgaggtcgaggaaggtcagtttcgcatcaagggctacgatggcccggtgatcgagtgc
gacaagtgcggttccgacatgcagctcaagaccgggcgtttcggcaagtacttcggctgc
accaacgagaattgcaagaacacccgcaagctgctcaagtccggtgaagtggcgccgccg
aagatggacccgattccgatgccggaactagcctgcgtcaaggtcgaggaccactacgtg
ctgcgcgatggcgccagtggcctgttcctggcggccagtcagttccccaagaatcgcgag
acgcgtccgccgctggtcaaggagctcaaggcgcatgccgacgagctgccggagaagtat
cacttcattctcgaggccccggatcaggacccggacggacgtccggcgcagattcgcttc
tcgcgcaaggtcaaggctcagtacgtcatgaccgatgaggaaggcaaggcgactggttgg
aaggcgacctacgacaacggccgctgggtcgtcgaggacaagcgcaaaggagccaagagc
tga
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