Halomonas sp. SF2003: C8233_08165
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Entry
C8233_08165 CDS
T05423
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C8233_08165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haf03019
]
C8233_08165
Enzymes [BR:
haf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C8233_08165
Messenger RNA biogenesis [BR:
haf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C8233_08165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HI1480
Gag_p24
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVV33655
LinkDB
All DBs
Position
complement(1983820..1985469)
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AA seq
549 aa
AA seq
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MTETTANSVPAFASLGLSAPVLKAIAEMGYSTPSPVQAGAIPAVLEGRDVMAAARTGTGK
TAGFALPLVERLSQSAPAGARKIKALIVTPTRELAAQIDENVTAYSRHLKLRNAVVFGGV
KINPQISRLSSGVEILTATPGRLLDLHSQKAIDFSDLETLVLDEADRMLDMGFIHDIRRL
LKLLPTKRQTLLFSATFSDEIRGMANKLLNDPVAVEASPRNTTAEKVEQHIHTVEKSHKP
SLLKHLIIKENWHQVLVFTRTKHGANRLATKLEKSGISAAAIHGNKSQNARTKALAGFKN
GEVRVLVATDIAARGLDIEQLPQVVNYELPNVPEDYVHRIGRTGRAGASGRAISLVSSDE
RKELGGIERLLKGKLKRVEVEGFVPEVDVEPEREPRQPRGGQRSGGQRTGGKPAAEGRGN
GGQRSGGQRSGGQRSESQRSGGQRTGGKPAGEGRGNGGQRTGGARSGGQRSEGQRTGGQP
QQTARVDDDNRGNRAPVQREVDGNRVAPQAEVNGNRAPNAPSNDERPRRRSRGGRNRSSG
GNGGGRSNG
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgactgagactactgccaattccgtcccggcgtttgcctccctggggctgtccgctcct
gtcctgaaagcgatcgccgagatgggctattccacgccgtctcccgtccaggcaggtgcg
attcctgccgtgctggaaggccgtgatgtgatggctgccgcgcgcaccggtaccggcaag
accgccggtttcgccctgccgctggtcgagcgcctctcgcagagcgctcccgcgggtgcc
cgcaagatcaaggccctgatcgtcacgcctacgcgtgaactggccgcgcagatcgacgag
aacgtcactgcctattcccgtcacctgaagctgcgcaatgccgtggtattcggtggcgtg
aagatcaacccgcagatcagccgcctgtcctctggcgtcgagatcctgaccgccacgccg
ggccgcctgctggacctgcactcccagaaggccatcgacttctccgatctcgagacgctg
gtgctggatgaagcggaccgcatgctggacatgggcttcatccacgacatccgtcgtctg
ctcaagctgctgccgaccaagcgtcagacgctgctgttctccgcgaccttctccgatgag
attcgcggcatggccaacaagctgctgaatgacccggtggcggtggaagccagcccgcgc
aacaccacggccgagaaggtcgagcagcatatccacaccgtggagaagagccacaagcct
tcactgctcaagcacctgatcatcaaggaaaactggcaccaggtgctggtcttcacccgt
accaagcacggtgccaaccgtctggcgaccaagctcgagaagtccggcatcagtgctgcg
gcgattcacggcaacaagagccagaatgcgcgtaccaaggcactggccggcttcaagaac
ggcgaagtgcgagtgctggtcgcgacggacatcgcggcgcgtggcctggatatcgagcag
ttgccgcaggtcgtgaactacgaactgcccaacgtgccggaagactacgtgcaccgtatc
gggcgtaccggccgtgccggcgccagcgggcgtgccatctcgctggtctccagcgatgag
cgcaaggaactcggcggcatcgagcgtctgctcaagggcaagctcaagcgcgtcgaagtg
gaaggtttcgtgccggaagtcgatgtcgagccggaacgtgagccgcgtcagccgcgtggt
ggtcagcgctctggcggccagcgtactggcggcaagcctgccgctgaaggccgtggtaat
ggcggccagcgttctggcggccagcgttcgggcggccagcgctctgaaagtcagcgttct
ggcggccagcgcactggcggcaagcctgctggtgaaggtcgtggcaatggcggccagcgc
actggcggcgcgcgctcgggcggtcagcgttctgaaggccagcgcactggcggtcagcct
cagcagaccgcgcgtgtcgatgatgacaaccgcggcaaccgtgcaccggtgcagcgtgaa
gtcgatggcaatcgcgtcgcgccgcaggcggaggtaaacggcaaccgtgcgccgaatgcg
ccgagcaatgatgagcgcccgcgtcgccgctcgcgtggtggtcgcaaccgctccagcggt
ggcaacggtggtggccgctccaacggctga
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