Halomonas sp. SF2003: C8233_08730
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Entry
C8233_08730 CDS
T05423
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
haf
Halomonas sp. SF2003
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_08730
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C8233_08730
Archaeal homologous recombinant proteins
C8233_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
nSTAND3
RsgA_GTPase
AAA_22
cobW
Motif
Other DBs
NCBI-ProteinID:
AVV33746
LinkDB
All DBs
Position
2139267..2142857
Genome browser
AA seq
1196 aa
AA seq
DB search
MKILALRLDNLASLAGAHEVDFEKAPLSDAGLFAITGPTGAGKSTLLDALCLALYGTTPR
LRQTPSGGQLEDVGEHQLTLKDPRSLLRRGCGEGKAEVDFIGRDGLRYRASWTVSRARGK
PGGRLQNAKQHLQLLPTGDDTQPAQTLNTTSNDAKALIIDRLGLNFEQFTRAVLLAQSEF
SAFLRANDNERSELLEKLTDTGHYSEISMAAHERERAAREAVNELERKLEGQLPASPQER
QALEEEVRLHQTAMTRLSEQHDALTAYHQWTTTAGELEQALRQAQQEQTESHAASDGLSR
QREQLSALEALAPIRPALLRLKAIAPQHAQLVTQLAQLEQQLGALSPRVEQARAARHTAD
ERMQRCDTWRGEQLPKLEEARQVASRLVQQREAHASQQSEQQRLRDTLGQHQQELETKDR
QRQQLEQQLQQLQATLVDESGQPLSDAEDYRDQLQRQRDALLELKPVLSEQISGLARRDE
VQQRLVELEQQLPRQQQALRDVAARQVQALQARDQARHEEEAERRQQEQERLARSDNVMA
MRRGLVQGEECPVCGSHEHPATGQAAPAEALIAQLEQQARERLDQRRQATATAQQAMETA
SHEHARLEEQLGYLQQEQTQLHTELQRLQQQAQSCQTSLTELLARHSLSEQPQLAPLPQL
PAAHALQLIEQRLGELDARQNTLVTTLRQLTPLREQRQALATRHATLTTQCQHGEAQLHQ
CETQITALAREIEQLSDTLAQQLSADPKRQHASVSDWSDWIESLTTRMRNEQEDARQALQ
ELSDQQQQLTQQQANLQQRQAELREEQDSLDRERAHWQAANPGLDEARIAELLAVEDHEL
QALRQQLRSAHERVARADALCEERNARQLKHWQAARTSSWQAALEQLAALEQLAAPAVET
SGAGTAGEGPARVSTAGEGTAGDGASGTEETGVIRAQAQQALALHARLQAHLQPPQEDAA
GAPKDAQPQPEEDTHALGEALATLIAALKTPLTAVREAHQSAQAAILNDDQRRSGSAELG
EQLARARAVHERWGALSELIGSASGAKFRTIAQAFNLERLIEHANLHLANLVRRYRLARG
ASPLGLVVVDTEMGDELRSVHSLSGGETFLVSLALALGLAGMASGELRIESLFIDEGFGS
LDPDSLALAMEALDGLQASGRRVGVISHVAEMHERIPVRIAVRPSGNGQSRLEIEG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctcgccctgcgcctcgacaacctggcctcgctggccggcgcacatgaagtc
gacttcgagaaggcgccgctgtccgatgccggcctgttcgccatcaccggtcccaccggg
gccggcaagagcacgctgctcgatgccctgtgtctggcgctttatggcaccacgccgcgc
ctgcgccagacgccgagtggcggtcagcttgaagatgtcggcgagcatcagctgacgctc
aaggacccgcgcagcctgctccggcgtggctgtggcgaaggcaaggccgaggtggatttc
atcggccgcgatggcctgcgctatcgcgccagctggacggtcagccgcgcgcgcggcaag
cctggtgggcgcctgcagaatgccaagcaacatctccagctgctgcccaccggcgatgac
acccagccggctcagaccctcaacaccaccagcaatgacgccaaggcattgatcatcgac
aggctcgggctgaatttcgagcagttcacccgcgccgtactgctggcgcagagcgagttc
agcgcctttctgcgtgccaatgacaatgaacgctcggagttgctggagaagctgaccgat
accggccattactccgagatctcgatggccgcccatgagcgcgagcgcgccgcccgcgag
gccgtcaatgaactggagcgcaagctggagggccagctgccggccagcccgcaggaacgc
caggcgctcgaggaggaagtccgtctgcatcagacggccatgacccggctcagcgaacag
catgatgcgctgacggcctatcaccagtggaccaccacggcgggcgagctcgaacaggcg
ctgcgtcaggcgcagcaggagcagaccgagtcccacgccgccagcgatgggctttcccgt
cagcgcgaacaactcagcgccctggaggcccttgcgccgattcgccctgccctgctgcgc
ctcaaggcgatcgcgccgcagcatgcgcagctggtcacgcaactggcccagctggagcag
cagctcggcgccctgtcgcccagggttgagcaggccagagccgccaggcacaccgccgat
gaacgcatgcagcgctgcgatacctggcgtggcgagcaactgccgaagcttgaagaggca
cgtcaggtggcctcgcgtctggtgcagcaacgcgaagcacacgccagccagcagagtgaa
cagcaacgcctgcgcgatacgctcggccaacatcagcaggagctggagacaaaggatcgc
cagcgccagcagctggagcagcaactccagcagctgcaggcaacgctggtcgacgagtcc
ggccagccgctgagcgatgccgaagattatcgtgaccagctgcaacgtcagcgcgatgca
ctactggagctcaagcccgtactcagcgagcagatcagtggcctggcccgccgtgatgag
gtgcagcagcgtcttgtcgagctggagcagcaactgccccgacagcaacaggcgttgcgg
gatgtggctgcccggcaggtgcaggcattgcaggcccgcgaccaggcgcgccacgaggaa
gaggccgagcgccgccagcaggagcaggagcgtctggcgcgcagcgacaacgtgatggcg
atgcgccgcgggctggtccagggcgaggagtgcccggtgtgcggcagccacgagcacccc
gccaccggccaggccgcaccggccgaggcgctgatcgctcagctggagcagcaggcccgc
gagcgccttgatcagcgccgtcaggccacagccactgcgcagcaagccatggagacagcc
agtcacgagcacgcccgcctagaggagcagctcggttatcttcagcaggaacagactcag
ctgcacacggagctgcaacgcctgcagcagcaggcgcagagctgccagacgagcctgacc
gagcttctggcccggcattcgctgtcagagcaaccccagcttgcacccttgccgcagctg
ccagctgcccacgcactgcaactgatcgagcagcgccttggggaactggacgcccgccag
aacacgctggtgacgacactacgccagctgacgccgctgcgcgagcaacgccaggcgctg
gcaacacgccatgccacgctgacgacgcaatgccagcatggtgaggcacagcttcatcag
tgcgagacgcagatcactgcgctggcgcgcgagatcgagcaactcagtgacacgctcgcc
cagcagctgagcgcagaccccaagcgacagcatgccagcgtgagcgactggtccgactgg
atcgagtcgctgaccacccggatgcgcaacgagcaagaggatgcgcggcaggcactgcag
gaattgagcgaccagcaacagcagctgacgcagcagcaggccaacctgcagcagcgccaa
gcggagctgcgcgaggagcaagactcgctcgaccgcgaacgcgcgcattggcaggcagcg
aatcccggcctggatgaggcgcgcatcgcggagttgctggccgtcgaggatcacgagctg
caggcactgcgccagcaactgcgcagcgcccacgagcgcgtcgcacgcgcggatgccctg
tgtgaggagcgcaatgcgcgtcagctcaaacactggcaggccgctcgaacctccagctgg
caggcagcactcgaacagctggcagcactcgagcagctggcagcgcccgccgtggagacg
tcaggagcaggtaccgctggagaaggtccggcgagagtaagcacggcgggagaaggcacc
gcaggagacggtgcttcaggaactgaagagacgggcgtcatccgcgcccaggcccagcag
gccttggcgctgcatgctcgcttgcaggctcatctgcaacccccgcaagaagatgccgct
ggtgcgccaaaggatgcgcagccacagcccgaggaagatacacacgcgcttggcgaggcg
ttggccactttgatcgcggcgctcaagacaccgctcactgccgtgcgcgaggcccatcaa
tcggcgcaggcggcgatactcaatgatgatcagcgccgcagcggcagcgccgaacttggc
gagcagctggcccgcgcccgcgcagtccatgaacgctggggcgcgctgtcggagctaatc
ggcagtgccagtggtgccaagttccgcaccatcgcccaggccttcaacctcgagcgtctg
atcgagcatgccaatctgcatctggccaatctggttcgccgctatcgtctggcgcgcggc
gccagcccgctgggtctggtggtggtggataccgagatgggtgacgagctgcgcagcgtg
cattcgctgtccggcggcgagaccttcctggtctcactggcgctggcgctgggcctggcg
ggcatggcctccggtgagctgcgcatcgaatcgctgttcatcgatgaaggcttcggtagc
ctcgacccggattcactggccctggcgatggaggcgctggatggcctgcaggccagcggc
cggcgcgtcggggtcatctcgcatgtggccgagatgcatgaacgcattccggtgcgtatc
gcggtgcgcccctcgggcaacggccagagccggctggagatcgagggctag
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