Halomonas sp. SF2003: C8233_08745
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Entry
C8233_08745 CDS
T05423
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C8233_08745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haf03019
]
C8233_08745
03009 Ribosome biogenesis [BR:
haf03009
]
C8233_08745
Enzymes [BR:
haf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C8233_08745
Messenger RNA biogenesis [BR:
haf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C8233_08745
Ribosome biogenesis [BR:
haf03009
]
Prokaryotic type
rRNA helicases
C8233_08745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVV33749
LinkDB
All DBs
Position
complement(2144494..2146200)
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AA seq
568 aa
AA seq
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MTTTSVVDRFSDLALLPAVLTSLEKLGYETPSPIQAQTIPSLLEGRDMIGQAQTGTGKTA
AFALPLLTRLDLDRREPQVLVLAPTRELAQQVAVNFTRYGQFMRGLEVATLCGGQDYREQ
MRSLKSGAQIVVGTPGRVIDHLDRKSLNLNGLKALVLDEADEMLRMGFIDDVKRVVADTP
KEAQRVFFSATLPTEIERIVNRYLVDPVKVAIKSESRTASTIEQMMVRVEGGAKLEALSR
LLEVETVDAAIVFVRTRAACTTVVEQLIARGISAAALSGDLDQSLRERTVTRLKRGKVDV
LVATDVAARGLDVARITHVFNYDLPGDSESFVHRTGRTGRAGREGRAITFVSGREMRKVR
WMEQALGQRITERQLPSEEEIRGHRDAAFRARVVEALGSSSNGHRALVQSLVEEGHDPVE
LAAVFVKMARAEETPIQSLPKPGARRNERSERGERTERPERGERRNSAPVAREGMKLYRV
AVGHRDGVKPGQLVGALANEGGIEGSRIGRIDIRNTHSVVELPSGLPTSIVSKMARARVA
GRPLELAEDGAGARPQRREGGNDDRRRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacttccgtcgtcgatcgcttcagcgatcttgccctgctgcctgccgtcctg
acctctctcgagaagctgggctacgaaactccgtccccgatccaggctcagaccatcccg
agtctgctcgaaggccgtgacatgatcggccaggcacagacgggtaccggcaagaccgct
gcctttgcactcccgctgttgacccgtctggacctcgaccgccgtgaaccgcaggttctc
gtgctggccccgacccgtgagctggcccaacaggtcgccgtcaacttcacacgttacggt
cagttcatgcgtggcctggaagtggccactctctgcggtggtcaggactaccgcgagcag
atgcgtagcctcaagagcggcgcgcagatcgtcgtcggcaccccgggtcgtgtcatcgac
cacctggaccgcaagagcctgaacctgaacggcctgaaagccctcgtgctggatgaagcc
gatgagatgctgcgcatgggcttcatcgatgacgtcaagcgcgtcgtcgccgataccccg
aaggaagcgcagcgcgtcttcttctccgcgacgctgccgaccgagatcgagcgtatcgtc
aaccgctacctggttgatccggtcaaggttgccatcaagtccgaatcgcgtaccgcttcc
accatcgaacagatgatggtgcgtgtcgaaggcggcgccaagctggaagcgctgtcccgt
ctgctggaagtcgagaccgtcgatgcggccatcgtcttcgtgcgtactcgtgccgcctgt
accactgtcgtcgaacagctgatcgctcgcggtatctccgcggcagcgctgtccggtgat
ctggaccagtccctgcgcgagcgcaccgtgactcgcctgaagcgtggcaaggtcgacgtg
ctggtcgcgaccgacgtcgccgctcgtggtctggacgtggcgcgtatcacccacgtcttc
aactacgacctgccgggtgacagcgaatccttcgtccaccgtactggtcgtactggccgt
gccggtcgtgaaggtcgcgccatcactttcgtcagcggtcgcgaaatgcgcaaggttcgc
tggatggagcaggccctgggccagcgcatcaccgaacgccagctgccgagcgaagaagag
atccgtggtcaccgtgacgccgccttccgtgctcgcgtcgtcgaagccctgggcagcagc
tccaacggtcaccgcgctctggtccagagcctggtcgaagaaggtcacgacccggtcgag
ctggccgctgtcttcgtcaagatggctcgcgccgaagagacgccgatccagtctctgccg
aagccgggtgcgcgtcgcaatgagcgttccgagcgcggtgagcgcaccgagcgtccggaa
cgcggtgagcgtcgcaactccgcgccggtcgcacgtgaaggcatgaagctctaccgtgtg
gccgtcggccaccgtgacggcgtcaagccgggccagctggttggcgctctcgccaacgaa
ggcggcatcgaaggttcacgcatcggtcgcatcgacatccgcaacacgcacagtgtcgtg
gaactgccgagcggtctgccgaccagcatcgtgtccaagatggcgcgtgctcgcgtcgct
ggccgtccgctggaactggcagaagatggtgcgggcgctcgtccgcagcgccgtgaaggt
ggcaacgacgaccgtcgtcgcgcctga
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