Halomonas sp. SF2003: C8233_09110
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Entry
C8233_09110 CDS
T05423
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03420
Nucleotide excision repair
haf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C8233_09110
03430 Mismatch repair
C8233_09110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_09110
Enzymes [BR:
haf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C8233_09110
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C8233_09110
MMR (mismatch excision repair)
Other MMR factors
C8233_09110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_11
AAA_30
DUF7674
Motif
Other DBs
NCBI-ProteinID:
AVV33809
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All DBs
Position
2243972..2245720
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AA seq
582 aa
AA seq
DB search
MPYRNLTSEQMEAVSYNSDMLLSACPGSGKTRTLVSKLYHIIDQSDHLSIGKRKIIAITY
TNIAADTIKERLLSFGVESKSLWVGTIHSLCLQWIINPNINLVPRLCGGFTIIDEHERDA
KIAELKEFYDFGFFDSIDTSLTQDYKPRYPVGTKSHSLVTDYHNYLADNSYIDFSLILNI
SYRLLQSNTKLCNRLSRLFYHILVDEYQDTSKIQYEILKLIVIRKHTKITLIGDKEQAIY
TGLGAIVKDKKELETFFELDTALEEKRLTGCFRSSQRIIDHYIKYQDEGYAVKSESDIHD
FSSVVHLENKIHKSKLPEYIINIVEHHLDQGIPENEIVILCPSWFDVIGVSNKLNNLEKG
FDIDGFLISPIPKNQDNIWLNLIRLVLTKPDIKNYLKRRRYSSELSEKINTITQDDELTS
SKKILKTINSICVESDDEIENWIENIITIFCNKLKISLDAETVVYSEKESLKKSTSERIK
KYKMNYRASDLESFFSSASGVKITTSHSTKGDEYEVVICTGLLHGKIPHWNDIINKTTQH
QDYVARRLLYVICSRAKKHLYLISEQGYQTGSGYPYTPTQQL
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgccttatagaaatctaacatcagaacaaatggaagctgttagctacaatagtgacatg
ttactttctgcatgtcccggttctggaaagacgaggactcttgtatcaaagctttatcac
ataatcgaccaatccgatcacctatccataggaaagcggaaaattatcgccataacttat
acaaatatcgcggcagacacaattaaagaaaggcttttatcatttggtgtagaaagcaaa
tccttatgggtggggacaatacattcactttgcctacaatggataatcaacccgaacatc
aacttggttccaagattgtgtggtggcttcactattatagatgagcatgaaagggatgca
aaaatcgccgaacttaaagaattttatgatttcggtttttttgattcgatagatacatct
cttacacaggactacaagcctagatacccagtaggaacaaaatctcacagtctggtcact
gactaccataactatctagctgacaatagttatatagacttttctttaattcttaacatt
agctatcggctactacagtccaatacgaaactttgcaatcgtttaagcaggcttttttat
cacatactcgttgatgagtaccaagatacatcaaaaatacaatatgaaatactaaaactc
attgtgataagaaaacatacaaaaatcacactgataggcgataaagaacaagcaatatat
acaggattaggtgcaatcgttaaagacaaaaaagaactagaaactttctttgaactagat
acagcacttgaggaaaagcgtctgactggctgctttcgaagtagccagagaattatcgac
cattacataaaatatcaagacgagggttatgcggtaaagtctgaatccgatattcatgac
ttttcgtctgtggttcatttggaaaataaaattcataaatcgaaacttccagagtacatt
ataaacatcgtggagcatcacttagatcaaggaattcctgaaaatgagatcgttatactt
tgccctagctggttcgatgtgattggcgtttcaaacaaactaaataatttagaaaagggt
tttgatattgatggttttctaatttctccaattccaaaaaatcaagataatatttggctt
aacttaattcggctggtcctaaccaaaccggacatcaaaaattatttaaaaagaagaagg
tattcaagcgaactatcagaaaaaataaataccataactcaggatgatgagctaacctca
tccaaaaaaatcctaaaaacaataaattcaatatgcgtagaaagtgatgatgaaattgaa
aactggatcgaaaacatcattacaattttttgcaataaacttaagataagtttagacgct
gaaactgtagtatatagtgaaaaggagagtttaaaaaaatctacatcagaaagaataaaa
aaatacaagatgaattatagagccagtgacctagaatcgttcttttcctcagctagtggt
gtaaaaataaccacatcccattctacaaagggcgatgaatacgaagtcgtcatatgcact
ggtttattacatggaaaaatacctcattggaatgatataataaataaaaccactcagcat
caagactatgttgctagaaggttgctttatgtaatttgctcccgtgcaaaaaagcatctt
tacctgatatcggagcaaggctaccaaacaggaagcggctatccatatactcctacccaa
cagctctaa
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