Halomonas sp. SF2003: C8233_10055
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Entry
C8233_10055 CDS
T05423
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03030
DNA replication
haf03410
Base excision repair
haf03420
Nucleotide excision repair
haf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C8233_10055
03410 Base excision repair
C8233_10055
03420 Nucleotide excision repair
C8233_10055
03440 Homologous recombination
C8233_10055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haf03032
]
C8233_10055
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_10055
Enzymes [BR:
haf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C8233_10055
DNA replication proteins [BR:
haf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C8233_10055
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
C8233_10055
NER (nucleotide excision repair)
GGR (global genome repair) factors
C8233_10055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AVV33948
LinkDB
All DBs
Position
complement(2452247..2455135)
Genome browser
AA seq
962 aa
AA seq
DB search
MAATPIVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVINMLKSLIRQYPDSPMAVVFD
AKGKTFRDDMYPEYKAQRPPMPDDLRLQVEPLHACVRALGLPLLCVEGVEADDVIGTLAR
MATEAGRDAVISTGDKDMAQLVNEHITLVNTMKNETLDVDGVTEKFGIPPNLIIDFLALM
GDKVDNIPGVPGVGEKTALGLLQGMEGGLDTIYGDLDRIKTLSFRGAKTLAKKMEAHRED
AYLSYRLATIKLDCELEYGLDDLAIAAPDTAALVELYKEMEFRAWLKELLEGGDMAATPH
ADEKDSGVAGSDLFGDSIAPVADKASGKGKTAAAPTPDLEAAEEGDEMPDALPPREERNY
RAITEQAELDAWLERVRNATSLCFDLETTSLNYMEAEIVGIGMALEVGEAVYIPVAHSYL
DAPAQLERQAVLEALTSILADTAITKIGQNLKYDIEVLARYDIAVAGPLADTMLMSYVLN
STATRHDMDSLALKYLGESTISFTDIAGKGAKQLTFDQIALEEAMPYACEDVDITLRLAA
LLMPRIEKLGRLDEVLRQFEYPLIPVLARIERNGVAIDPERLHVQTRELTEQIHDIEKQA
FELAGREFNLSSPKQLGEILFEEQKLPVKKKTPKGAPSTAEAVLEELALDYPLPKLIMRH
RGMTKLKSTYTDKLPQLVNPTTRRLHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIR
QAFIARPGYRIVAADYSQIELRIMAHLSGDKGLLSAFADNRDVHAATAAEVFGTEESRVS
SDQRRSAKAINFGLIYGMSAWGLSRQLDIEPGQAKTYIERYFERYPGVATYMEDTRQLAA
EQGYVETIFGRRLYLPEIGSRNHARRSAAERTAINAPMQGSAADIIKRAMIDVDAWLVGS
DGADRYDAMMVMQVHDELVFEVAEAQVEDFMKDVAQRMQNAASLDVPLLVEVEQGDNWEE
AH
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgccgatcgttctcgtcgatggatcttcctatctctatcgtgcctttcat
gctctgccgccgctgaccacctccaagggcctgcccaccggcgcggtgaagggcgtgatc
aacatgctcaagagcctgatccgccagtacccggacagccccatggcggtggtcttcgat
gccaagggcaagaccttccgcgacgacatgtaccccgagtacaaggcccagcgcccgccg
atgccggatgacctgcgcctgcaggtcgagccgctgcatgcctgcgtgcgtgcccttggc
ctgcccctgctgtgcgtggaaggcgtcgaggccgatgacgtcattggcaccctggcgcgc
atggcgacagaggccgggcgtgacgccgtcatctccaccggcgacaaggacatggcccag
ctggtgaacgagcacatcaccctggtcaacaccatgaagaacgagacgctggacgtggac
ggcgtcaccgagaagttcggcattccgccgaacctgatcatcgacttcctcgcgctgatg
ggcgacaaggtcgacaacattcccggcgtgccgggcgtgggcgagaagaccgcgctgggc
ctgctgcagggcatggaaggcggcctcgacaccatctacggcgatctcgatcgcatcaag
acgctcagcttccgtggcgccaagaccctggccaagaagatggaagcgcatcgtgaagat
gcctatctctcctaccgtctcgccaccatcaagctggactgcgagctggaatatggcctg
gatgacctcgcgatcgccgcaccggacactgccgcgctggtcgagctctacaaggagatg
gaattccgcgcctggctgaaggagctgctggaaggcggcgacatggcggccacgccgcat
gccgacgagaaggacagcggagtcgccggcagtgacctgttcggtgacagcatcgcgccg
gtcgctgacaaggcctcaggcaagggcaagaccgccgctgcgccaacgcctgatctggaa
gcggcggaagagggcgacgagatgcccgatgcactgccgccgcgtgaagagcgcaactac
cgcgccatcaccgagcaggccgagctggacgcgtggctcgagcgcgtgcgcaacgccacc
tcgctgtgcttcgatctcgagaccactagcctcaactacatggaagccgagatcgtcggt
atcggcatggcgctggaagtcggcgaggccgtctacattcccgtcgcccacagctatctg
gatgcccccgcgcagctggagcgccaggccgtgctggaagcgctgacgtcgattctggcc
gataccgccatcaccaagatcggccagaacctcaagtacgacatcgaggtgctggcgcgc
tatgacatcgcggtggccggcccgctggccgacaccatgctgatgtcctacgtgctcaat
tccaccgcgacccgtcacgacatggactcgctggcgctcaagtatctgggcgagagcacc
atcagcttcaccgacatcgccggcaagggcgccaagcagctgacgtttgatcagatcgcg
ctggaagaggcgatgccgtatgcctgcgaggatgtcgacatcaccctgcgcctcgccgcg
ctgttgatgccgcgcatcgagaagctggggcgtctggatgaagtgctgcgtcagttcgag
tatccgctgattccggtgctggcgcgcatcgagcgcaacggcgtcgcgatcgaccccgag
cgcctgcacgtccagacccgcgagctgaccgagcagatccacgacatcgagaagcaggcc
ttcgagctggcgggccgcgagttcaacctctcttcccccaagcagctgggcgagatcctc
ttcgaggagcagaagctgccggtcaagaagaagacgcccaagggcgcgccgtccaccgcc
gaagcggtgctggaggagctggcgctggactacccgctgcccaagctgatcatgcgccat
cgcggcatgaccaagctcaagagcacctacaccgacaagctgccgcagctggtcaacccg
accacgcgccgcctgcacaccagctaccatcaggccgtcaccgccacggggcgtctgtcg
tcgtccgatccgaacctgcagaacatcccggtgcgcagcgacgagggccgtcgtatccgt
caggccttcatcgcgcgccccggctatcgcatcgtcgcggcggattactcgcagatcgag
ctgcgcatcatggcgcacctctccggtgacaagggcctgctctcggcctttgccgacaac
cgtgacgtgcacgccgctaccgccgccgaagtcttcggcaccgaggaatcacgtgtcagc
agtgaccagcgccgcagcgccaaggccatcaacttcgggctgatctacggcatgtccgcc
tggggcctctcgcgtcaactggatatcgaacccggccaggccaagacctacatcgagcgc
tacttcgagcgttatccgggcgtcgccacctacatggaagacacgcgtcagctcgccgcc
gagcagggctacgtcgagaccatcttcgggcgccgtctctacctgccggaaatcggctcg
cgcaatcacgcgcgtcgcagcgccgccgagcggaccgccatcaatgccccgatgcaaggc
agcgccgccgacatcatcaagcgcgccatgatcgacgtggacgcctggctggtgggcagc
gacggcgccgacagatacgacgccatgatggtcatgcaggtacacgatgaactcgtcttc
gaagtcgccgaagcgcaggtcgaagacttcatgaaagacgtcgcgcagcgcatgcagaac
gccgcctccctcgacgttccgctgctcgtcgaagtcgagcaaggcgacaactgggaagaa
gcgcattaa
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