Halomonas sp. SF2003: C8233_11895
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Entry
C8233_11895 CDS
T05423
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
haf
Halomonas sp. SF2003
Pathway
haf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C8233_11895 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haf03021
]
C8233_11895 (rpoC)
03400 DNA repair and recombination proteins [BR:
haf03400
]
C8233_11895 (rpoC)
Enzymes [BR:
haf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C8233_11895 (rpoC)
Transcription machinery [BR:
haf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C8233_11895 (rpoC)
DNA repair and recombination proteins [BR:
haf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C8233_11895 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
BSH_YknX
Biotin_lipoyl
BSH_RND
DUF7129
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AVV34251
LinkDB
All DBs
Position
2870408..2874649
Genome browser
AA seq
1413 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMAHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLEKGHLLNDEQYFEALEEFGDDFDARM
GAEAIKALLEDIELEEEVERLREEIPQTNSETKIKKLSKRLKLLEAFYYSGNKPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGHASTIKAAKKMVEREAPEVWDFLADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAKGEGMAFANLGEVERAFGTH
SAHLHAMVKVRLTETLKDEESGELYEKTSLHDTTIGRALLFRILPKGMPFELINQVMKKK
AISGLINEAYRRVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKKVIIDAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDRVAKEMMAGISKETVVNWKGEVVNDEDG
KPMEQDSFNSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITEADCGTQEGLILHPVIEGGDI
IVPLSQRVLGRVVAQDVVDPVSDEVLIARGTLLDEAWCAQLDTMGVDEIIVRTTIGCETV
HGVCSACYGRDLARGHQVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQ
VKHGGSVRLHNIKSVERADGKLIVVSRSSALAVADAQGREREFYKLPYGAELSVRDGDSV
SSGQSVAKWDPHTHPIVAEVAGQVQFTDMEDGQTINRTTDEMTGLSSIEIIESASRPSAA
RDKRPMIMLVDGSGKHVTLPGSNTPVQYLLPGNAVVSAENGAAVGVGDVIARIPMEASGN
KDITGGLPRVADLFEARRPKEPAILAEISGTVTFGKETKGKRRLTITPAEGDPFELLIPK
WRQISVFEGETVEKGEVISDGPSNPHDILRLLGVAEMTKYITTEVQEVYRLQGVGINDKH
IEVIVRQMLRKVEITDSGDSTFITGDQVEYARVVEENMRLEADGKFPAKFDRILLGITKA
SLATESFISAASFQETTRVLTEASVTGKRDYLRGLKENVVVGRLIPAGTGLAYHDERRRR
RDGLPLAPAPSAQDVEQELGAQLTALDADDDDL
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagttctcaaatcgcaggcgcagtccgaagaattcgacgccatc
aagattaccctggcgtctccggacatgattcgctcgtggtcttttggtgaagtgaagaag
cctgaaaccatcaactaccggacattcaagccggaacgtgatggtcttttctgtgccaag
atctttggcccggtgaaggactacgagtgcctgtgtggcaagtacaagcggatgaagcat
cgcggcatcatctgtgagaagtgtggcgttgaagtgaccaaggcggcagtgcgtcgtgag
cgtatggctcacatcgaactggcgagcccggtcgcgcatatctggttcctgaagtctctg
ccgtcccgtatcggcatgctgctcgacatgactctgcgtgatatcgagcgcgtgctgtac
ttcgaaagcttcgtggtcatcgatccgggtatgacgactctcgagaagggtcatctgctc
aacgatgagcagtacttcgaagcgctggaagaattcggtgatgatttcgacgcccgcatg
ggtgccgaggccatcaaggcgctgctcgaggacatcgagctggaagaagaggtcgagcgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctcaagctgctggaagccttctactattccggcaacaagccgggctggatgatcatggaa
gtgctgccagtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgcttc
gcgacctcggatctgaacgatctgtatcgtcgtgtgatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtggatgcactgctcgacaacggtcgtcgcggtcgcgccatcaccggttccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgtgtcgactactccggtcgttccgtcatcaccgtcggcccgacc
ctgcgtctgcaccagtgtggtctgccgaagaagatggcgcttgagctgttcaagccgttc
atctacgccaagctgcaggcctccggtcacgccagcaccatcaaggccgccaagaagatg
gtcgagcgcgaagccccggaagtctgggatttcctcgccgacgtcatccgcgagcacccg
gtgctgctaaaccgtgccccgactctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggcaaggccatccaactgcacccgctggtctgcgctgcgtacaacgccgac
tttgatggtgaccagatggctgtccacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtcgtgctgggtctgtactacatgacccgcgagaagatcggtgcc
aagggtgaaggcatggccttcgcgaacctgggtgaagtcgagcgtgccttcggcactcac
agcgctcacctgcacgcgatggtcaaggtccgtctgaccgagacgctcaaggacgaagag
tccggcgagctgtacgagaagacgtccctgcacgacaccaccatcggtcgcgcactgctg
ttccgcattctgccgaagggcatgccgttcgagctgatcaaccaggtgatgaagaagaaa
gccatctccggtctgatcaacgaggcgtaccgtcgtgtcggtctgaaggacaccgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctcgcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggacgcgaagaaggtcatcatcgacgcggccgaagac
gaagtgaaagagatcgaagaccagttctcctccggtctcgtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccgtgtcgccaaggagatgatggca
ggtatctcgaaagagaccgtcgtcaactggaaaggcgaagtggtcaatgacgaagacggc
aagccgatggagcaggactccttcaacagcgtcttcatcatggccgactccggtgcgcgt
ggttccgccgcacagattcgtcagctggctggtatgcgtggcctgatggccaagccggat
ggctcgatcatcgagacgccgatcaccgccaacttccgtgaaggtctgaacgtactccag
tacttcatctccacgcacggtgcccgtaagggtctggcggatacggcactgaagaccgcc
aactccggttacctgacccgtcgtctggtcgatgttgcccaggatctggtcatcaccgaa
gcggattgcggcactcaggaaggtctgattctgcacccggtcatcgaaggcggcgacatc
atcgtcccgctgtcccagcgtgtgctgggtcgtgtcgtggcgcaggacgtggtcgatccg
gtctctgatgaggtcctgatcgcacgcggcacgctgctcgacgaagcctggtgtgcacag
ctcgataccatgggcgtcgatgagatcatcgtgcgtaccaccatcggttgtgaaaccgtg
cacggtgtctgctcggcctgttacggccgtgatctggcgcgtgggcatcaggtcaacgtc
ggtgaagccatcggtgtcatcgcggcacagtccatcggtgagccgggtacccagctgacc
atgcgtaccttccacatcggtggtgccgcttcgcgggcatctgccgtggatagcgtccag
gtcaagcatggtggcagcgtacgtctgcacaacatcaagtcggttgagcgtgccgatggc
aagctgattgtcgtctcgcgttccagtgcactggccgtggccgatgcgcaaggccgtgag
cgcgaattctataagctgccgtacggtgctgaactgtccgtgcgcgatggcgactcggtc
tcttccggtcagtccgtggcgaagtgggatccgcacacccacccgatcgtcgcggaagtc
gcgggtcaggtgcagttcacggatatggaagatggccagaccatcaaccgtaccaccgat
gaaatgaccggcctgtcctccatcgagatcatcgagagcgcttcacgtccgtccgcggca
cgtgacaagcgtccgatgatcatgctggtagacggtagcggcaagcacgtgacactgccg
ggctccaacacgccggtccagtacctgctgccgggcaatgccgtggtgtccgccgagaat
ggcgcagccgtcggcgtgggtgacgtcatcgcacgtatcccgatggaagcgtccggtaac
aaggacatcaccggtggtctgccgcgcgttgccgacctgttcgaagcacgtcgtccgaaa
gagccggccatcctggccgagatctccggtaccgtgaccttcggcaaggaaaccaagggc
aagcgtcgtctgaccatcactccggcggaaggcgatccgttcgagcttctgattccgaag
tggcgtcagatcagcgtgttcgaaggtgagacggtcgagaagggtgaggtcatctccgat
ggcccgagcaacccgcacgatatcctgcgtctgctcggcgtcgcggaaatgaccaagtac
atcaccaccgaagtccaggaggtctatcgcctccagggtgtcggcatcaacgacaagcac
atcgaagtgatcgtgcgtcagatgctgcgcaaggtggagattaccgactctggtgattcc
accttcatcacgggcgaccaggtggaatacgcccgtgtcgtcgaagaaaacatgcgactc
gaggcggacggcaagttcccggccaagttcgatcgcatcctgctcggtatcaccaaggcg
agcctggcaactgaatcgttcatctccgcggcgtccttccaggaaaccacgcgagttctg
accgaggcatctgtcaccggcaagcgcgattatctccgtggtctgaaggagaacgtcgtg
gtcggtcgcctgattcctgcgggtactggcctggcctatcacgacgagcgtcgccgccgt
cgcgatggcctgccgctcgcaccggccccgtcggcacaggacgtcgagcaggagctgggt
gcccagctgactgcgctagacgcggacgacgacgacctctga
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