Halomonas sp. SF2003: C8233_12165
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Entry
C8233_12165 CDS
T05423
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
haf
Halomonas sp. SF2003
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haf03021
]
C8233_12165
Transcription machinery [BR:
haf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
C8233_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Tudor_RapA
Helicase_C
ResIII
DEAD
Flavi_DEAD
Helicase_RecD
Cas3-like_C_2
Sas-6_C_CC
Motif
Other DBs
NCBI-ProteinID:
AVV34301
LinkDB
All DBs
Position
complement(2919121..2922063)
Genome browser
AA seq
980 aa
AA seq
DB search
MSDFIPGQRWISDGEADLGLGTILNVDFRTVTVLFAASEETRTYSLREAPLTRVAFGNGD
RIQSDDGEWLIVDDFKEVRGQIVYICERSGEHAGELIELPEARLNDKMQFNQARDRLLTG
QVDRNDWFDLRYRTLRHFHRVEQSPALGLSGPKVDLVPHQLYIADEVSRRHAPRVLLADE
VGLGKTIEAGLILHRLLLSGRASRALILVPASLTHQWLVEMLRRFALDVSLLDEEQCKAY
GTRNPFEGNQIILASQDWLFANPSRQVQAAACDWDMLIVDEAHHLDWSEDKVGPGYACVE
SLARQTAGVLLLTATPEQMGLESHFARLRLLDPERYHDIERFKAEEQGYVAVASAIDALE
ALPADQSGLDSLASVLDDSDSRALLDTLMDSDADDAQRDSARRQLRDQLLDRHGTGRVMF
RNSRTHVAGFPERRLHVHELELPSSYRRVVRKLERDEDYLDDLLIETGMNHPEVVLFLDE
MYRALPDDRMNAEPWWQIDPRVMWLLETLTDLGNEKALVICHTADTARELSEGLRVLGGV
HAPVFHEGMSLVERDRAAAAFASEEEGVQLLVCSEIGSEGRNFQFCHHLVMFDLPVHPDQ
LEQRIGRLDRIGQQFPIEIHVPVFEGSPGAQLLRWYRDGMDAFSAPHGIGSELYAQFGDE
LEEALLDSEEIDSIIEQTRERFDALQEERQSGRNRLLELNACRHERAEEVIAAIETLDND
KALPGYLERAFDIFGIESRDLGDGITYLAPGPHMLDGLPGLVKGEEGFSVTSDRATALSR
EDVQHLSWEHPLVREMLVRILDGSMGNTALALLKHPAIPGGRLMTEVVFRTQSTAPRGLR
LGRFLPPTAIRVLLDETGSNLSDKVSFGGLAKNLKPVKKAVARDLIKQSHATLRKLMSDA
EQEAERELPTIVEQAQQQMREQLSAELARLEALASHNPAVREEELEALRQERAALDGAIE
TTRLRLDSVRVIVTVDAHER
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttcattcccggtcagcgctggatcagtgacggcgaggctgatctcggcctt
ggcaccatcctcaatgtcgacttccgtaccgtcaccgtgctctttgccgccagcgaagaa
acccgcacctacagtctgcgcgaagcgccccttacccgggtggccttcggcaatggcgac
cgcatccagtccgacgatggcgaatggctgatcgtcgatgacttcaaggaagtgcgcggc
cagatcgtctacatctgtgagcgcagcggcgagcatgccggcgagctcatcgagcttccc
gaagcccgcctgaacgacaagatgcagttcaatcaggcacgtgatcgcctgctgaccggc
caggtcgaccgcaatgactggttcgacctgcgctaccgcaccctgcgccacttccatcgt
gttgagcagagcccggcgctgggcctatccggccccaaggtcgatctggtgccgcaccag
ctctacatcgccgatgaagtctcgcgccgtcacgcaccgcgcgtactgctggccgatgaa
gtcggcctcggcaagaccatcgaagccggcctgatcctgcaccgcctgctgctcagcggc
cgcgccagccgtgcgctgatcctggtaccggcgagcctgacccaccagtggctggtcgag
atgctgcgccgcttcgcgctggatgtttcgctgctcgacgaggagcagtgcaaggcctac
ggcacgcgcaaccccttcgaaggcaaccagatcattctggccagccaggactggctgttc
gccaacccgtcgcgtcaggtccaggctgccgcctgcgattgggacatgctgatcgtcgat
gaggcccaccacctcgactggagcgaagacaaggtcggcccgggttacgcctgtgtcgaa
tccctcgctcgccagaccgccggtgtgctgctgctgaccgccacgccggagcagatgggg
ctcgagagccacttcgcgcgcctgcgcctgctcgacccggagcgctatcacgacatcgag
cgcttcaaggccgaggaacagggctatgtggccgtcgccagcgccatcgacgccctggaa
gcgctgcccgccgatcagtccggtctcgacagcctcgccagcgtgctggatgacagcgac
agccgcgccctgctcgacaccctgatggacagcgatgccgacgatgcccagcgcgacagc
gcgcgtcgtcagctgcgcgaccagctgctcgaccgccacggcaccggccgcgtgatgttc
cgcaactcacgcacccatgtcgccggcttccccgagcgtcgcctgcacgtccacgagctt
gagctgccctcctcctaccgtcgcgtggtacgcaagctggagcgtgacgaggactatctc
gatgacctgctgatcgagaccggcatgaaccaccccgaggtggtgctgttcctcgacgag
atgtatcgcgccctgcccgatgaccgcatgaacgcggagccctggtggcagatcgacccg
cgcgtcatgtggctgctggaaaccctgaccgacctcggcaacgagaaggcactggtgatc
tgtcataccgccgataccgcgcgtgagctgtccgaaggcctgcgcgtgctgggcggcgtg
catgcgccggtcttccatgagggcatgagcctggtcgagcgcgaccgtgccgccgcggcc
ttcgcctccgaagaggaaggcgtgcagctgctggtgtgctcggaaatcggctcggaaggt
cgcaacttccagttctgtcaccacctggtgatgttcgacctgccggtacatccggaccag
ctcgaacagcgcatcgggcgtctggatcgcatcggtcagcagttcccgatcgagatccac
gtgccggtcttcgaaggctcgccgggcgcccagctgctgcgctggtaccgtgacggcatg
gacgccttcagcgcgccgcacggcatcggcagcgagctctacgcccagttcggcgacgag
ctggaagaagccctgctcgacagcgaagagatcgacagcatcatcgagcagacccgcgag
cgcttcgacgccctgcaggaagagcgtcagtccggccgcaaccgcctgctggaactcaat
gcctgccgtcacgagcgcgccgaggaagtcatcgccgccatcgagacgctggacaacgac
aaggcgctgcccggctatctggagcgcgccttcgacatcttcggcatcgagagccgggac
ctcggcgacggcatcacctatctggcaccgggcccgcacatgctcgacggtctgccgggg
ctggtgaagggcgaggaaggcttcagcgtcaccagtgaccgcgccaccgcgctgtcacgc
gaagacgtgcagcatctgtcgtgggagcacccgctggtacgcgagatgctggtccgcatc
ctggacggctcgatgggcaacaccgcgctggcgctgctcaagcacccggcgattcccggt
ggccgcctgatgacggaagtggtgttccgcacccagtccaccgcgccgcgcggcctgcgt
ctgggccgcttcctgccgccgaccgccatccgtgtcctgctggatgaaaccggcagcaac
ctgtccgacaaggtgtccttcggcggactggccaagaacctcaagccggtcaagaaggcg
gtcgcgcgtgacctgatcaagcagagccacgccacgctgcgcaagctgatgagcgatgcc
gagcaggaagccgagcgcgaactgccgaccatcgtcgagcaggcccagcagcagatgcgc
gagcagctcagcgccgaactggcacgcctggaagcattggccagccacaacccggccgtg
cgcgaggaagagctcgaagcgctgcgtcaggagcgtgccgcgctggatggcgccatcgag
accacccgtctgcgtctggacagcgtgcgcgtcatcgtcaccgtggatgcccacgagcgt
tga
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