Halomonas sp. SF2003: C8233_13530
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Entry
C8233_13530 CDS
T05423
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
haf
Halomonas sp. SF2003
Pathway
haf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
haf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C8233_13530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haf03021
]
C8233_13530
Transcription machinery [BR:
haf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C8233_13530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AVV34536
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Position
3239477..3241315
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AA seq
612 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPEQVEDIISMINDMGIKVAEE
APDADTLMMSDSSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIK
IAKRIEEGTREVMSSLAFLPGAVDSILEAYDGTLGEDGGRLSDLFSGFIDPDEGVPGVAE
VEVEEVEEIPEGEESEGDEDEDDDSASEGGPDPELARVRFEQIREQNEATKAAIEKYGSG
SAEAKAEQDRLAELFSPIKLVPKHFERLVGQVRVSVEQVREQEKVILQIFVKRGKVPRKS
FIKAFPGHESDMDWFDSFIGGSKKYADKLEPFRADVLRAQRKIAFEQDMVQLPVSELKEV
NRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPE
ELGERLEMPEDKVRRVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMVSPIDSATGEGLI
EATRGILSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSESLRSFMEE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctggtaatgcgcagcagcagtcgcgtctcaaggagttgatcgcgcgcggcaaggaa
cagggttacctgacctatgccgaggtcaacgatcacctgcccgaggatatcgctgatccc
gaacaggtggaagacatcatcagcatgatcaacgatatgggcatcaaggtcgcggaagaa
gcgcccgatgccgataccttgatgatgtctgattcctccactgacgagtctgccgccgaa
gaggccgttgccgccctcgccgcggtggaaagcgatgtgggacgcaccaccgaccccgtc
cgcatgtacatgcgtgagatgggcaccgtggaactcctgacccgcgaaggcgaaatcaag
atcgccaagcggatcgaggagggcacgcgtgaggtgatgtcgtcgctggcattcttgccg
ggggcagtcgactccatcctggaagcctacgacggcactctgggcgaagacggcggacgt
ctgtccgatctcttctccggcttcatcgaccctgacgaaggcgtgccgggtgtcgccgaa
gtcgaagtcgaggaagtcgaagagattcccgagggcgaagagtccgaaggcgacgaagac
gaagacgacgattccgcctctgaaggtggcccggaccccgagctggcccgcgtccgcttc
gagcagatccgtgagcagaacgaggcgaccaaggctgccatcgagaagtacggttccggc
tctgccgaggcgaaagccgaacaggaccgtcttgccgagctgttctcgccgatcaagctg
gtgcccaagcacttcgagcgtctggtcggccaggttcgcgtgtccgtcgagcaggtgcgc
gagcaggaaaaggtcatcctgcagatcttcgtcaagcgcggcaaggtgcctcgcaagagc
ttcatcaaggccttcccgggccacgagtccgacatggactggttcgacagcttcatcggt
ggcagcaagaagtacgccgacaagctcgagccgttccgtgccgacgtgctgcgtgcccag
cgcaagatcgccttcgagcaggacatggtccagctgccggtcagcgagctcaaggaagtg
aaccgtcgcctgtcgatcggtgaagccaaggcgcgtcgtgccaagaaggaaatggtcgag
gccaacctgcgtctggtcatctccatcgccaagaagtacaccaaccgtggtctgcagttc
ctggatctcatccaggaaggcaacatcggtctgatgaaggccgtggacaagttcgagtac
cgtcgtggttacaagttctcgacctacgccacctggtggatccgtcaggcgatcactcgc
tccatcgcggaccaagcgcgcaccatccgtattccggtgcacatgatcgagaccatcaac
aagctgaaccgtgtctcgcgtcagatgctgcaggaaatgggtcgcgagccgacgccggaa
gagctgggcgagcgtctcgagatgccggaagacaaggtgcgtcgcgtgctcaagatcgcc
aaggagcccatctccatggagacgccgatcggtgacgatgatgattcgcacctgggtgac
ttcatcgaggacggcaccatggtctcgccgatcgactccgccaccggcgaaggcctgatc
gaagcgacccgcggcatcctgtccggcttgaccgcacgtgaagccaaggtgctgcgcatg
cgcttcggtatcgacatgaacaccgaccataccctcgaggaagtcggcaagcagttcgat
gtcacccgtgagcgtatccgtcagatcgaagcgaaagcgctgcgcaagctgcgtcacccg
tcacgctccgagtcactgcgttccttcatggaagagtga
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