Halomonas sp. FeN2: KF947_05365
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Entry
KF947_05365 CDS
T10697
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hafn Halomonas sp. FeN2
Pathway
hafn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hafn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KF947_05365 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hafn03021
]
KF947_05365 (rpoD)
Transcription machinery [BR:
hafn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KF947_05365 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UBR50927
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Position
complement(1147942..1149792)
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AA seq
616 aa
AA seq
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MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIGMINDMGISVAEE
APDEDTLMMSDQSTDESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGTREVMSSLAYLPGAVASILDAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVA
EAEVPEPEPEPEIDDDVESDGDDEDEDSTASEGGPDPEEARARFEQIREQNALVEAAFAK
HGRGSPELKAEQARLAVLFSPIKLVPKHFERLVGQVRISVEQVRAQEKAVMQLCVKKAKV
PRKTFIKSFPGNESSKTWLDEFQAAQSKYADRLEPLRADIARAQRKIAFEEDMVQLSVAD
LKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGRE
PTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDMATG
EGLIEATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEPLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatgcgcagcagcagtcgcgtctgaaggagttgatcgctcgaggcaaggaa
cagggctacctgacctatgccgaggtcaacgaccatctacccgaggatatcgccgacccg
gatcaagtggaagacatcattggcatgatcaacgacatgggtataagtgtcgctgaagaa
gcgccagatgaagacactttgatgatgtcggatcaatccacggacgagtccgctgcggaa
gaggccgtagcggctcttgccgccgtggaaagcgatgtaggccgcaccactgaccccgta
cgcatgtatatgcgtgaaatgggcacggttgagcttctgacccgtgaaggcgaaatcgaa
atcgccaaacggatcgaagagggtacccgtgaagtgatgtcgtctctggcctatttgccg
ggagccgtcgcgtctattttggacgcctatgacgccacccaggatgaagaagcgccgggg
cgtctttcggatctattttctggtttcatcgatcccgatgaaggcattcccggcgttgcc
gaagcagaggtgcccgagccagagcctgagcccgaaattgacgacgacgttgagagcgac
ggcgacgatgaagacgaggactctacggccagcgaaggcggcccggatcccgaagaggcc
cgtgcgcgtttcgagcagattcgcgagcagaacgccttggtcgaagcggcgtttgccaag
catggtcgtggtagtcccgagcttaaagctgagcaagcccgcttggcggtgcttttctcg
cccatcaagctggtgcctaagcacttcgagcgcttggtcggtcaggtgcgcatcagcgtt
gagcaagtgcgtgcccaagagaaagcggtcatgcagctgtgcgtgaaaaaagccaaggtg
ccgcgtaagacgtttatcaagtcgtttcctggtaatgagtcgagcaaaacatggctggat
gagtttcaggcagcgcagagcaagtacgccgaccgccttgagccgctgcgcgccgacatc
gcccgtgcccagcgcaagatcgccttcgaagaggatatggtgcagctctcggttgccgac
cttaaagaggtgaaccgcaagctctctattggtgaggcgaaagcccgtcgcgccaagaaa
gagatggttgaggctaaccttcgcttggtgatctcgatcgccaagaagtacaccaaccgt
ggtttgcagttcttggatcttatccaggaaggcaatatcggcttgatgaaagcggtcgac
aagttcgaatatcgccgtggctataagttctcaacctatgccacctggtggattcgtcag
gcaattacccgctcgattgccgatcaggcgcgcaccatccgtataccggtgcatatgatt
gagacgatcaacaagctcaatcgcgtatcgcgccagatgttgcaggaaatgggtcgtgag
ccgacgccggaagagctcggcgagcgtttggaaatgcctgaagataaagttcgtaaggtg
ctcaaaatcgccaaagagccgatctccatggagacgccgattggtgatgacgatgattca
cacctgggcgactttatcgaagacggtaccatgctactgcccattgatatggccaccggt
gaagggcttatcgaagcaacgcgcaacgtgttaggcggcttgaccgcccgcgaagcgaag
gtgctgcgcatgcgtttcggtatcgatatgaacaccgaccatacgctggaggaggtgggc
aagcagtttgatgtaactcgcgagcgaattcgtcagattgaagccaaagcgttgcgtaag
ctgcgtcatcccagccgctccgagccgctgcgttcgttccttgacgagtga
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