Halomonas sp. FeN2: KF947_12490
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Entry
KF947_12490 CDS
T10697
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hafn Halomonas sp. FeN2
Pathway
hafn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hafn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KF947_12490 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hafn03021
]
KF947_12490 (rpoC)
03400 DNA repair and recombination proteins [BR:
hafn03400
]
KF947_12490 (rpoC)
Enzymes [BR:
hafn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KF947_12490 (rpoC)
Transcription machinery [BR:
hafn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KF947_12490 (rpoC)
DNA repair and recombination proteins [BR:
hafn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KF947_12490 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
DUF8806
Motif
Other DBs
NCBI-ProteinID:
UBR48184
LinkDB
All DBs
Position
2724215..2728429
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLMNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEIDIEEESGERSFHRRIYDTTVGRALLFRILPEGVPFELIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVVHPGSGEVLIAKGTLLDEKWCAELDTMGVDEIIVRSTITCETAHGVCASCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGATVAK
WDPHTHPIVAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDSSGEYVSVSGSNTPVQYLLPGNSIISVDDGVTIGVGEVVARIPVEASANKDITGGLP
RVADLFEARKPKESSILAEISGVISFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGVEELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEKKFPAKYQRMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVEQLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcagtctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cctgagaccatcaactatcgtacctttaaaccggagcgggatggcctgttctgcgccaag
atctttggcccggtaaaagactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatttgcgaaaaatgtggcgttgaagtgaccaaagccgccgtgcgccgtgag
cgcatggggcacatcgagctcgcctctccggtggcgcatatttggtttctgaagtcactg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgtcgttatcgatccaggcatgaccacgctggagcgtggtcagctgatg
aacgacgagcagtactttgaagcgttggaagagttcggcgacgactttgatgcccgcatg
ggtgccgaagccgttcaggaactgctcaaagacatcgatctggaagaagagattaaccac
ctgcgcgaagagattccgcagactaactccgaaaccaagatcaagaagctctccaagcgc
ctcaagctgcttgaagccttctaccactccggcaacgcgccggcgtggatggtcatggaa
gtgctgcccgtgctgccgccggatctgcgtccgctggtaccgctggacggtggccgcttc
gcgacctctgatctcaacgacctttaccgtcgtgtgatcaaccgtaacaaccgcttgaag
cgtctgctggatctcaatgcgccggatattatcgtgcgcaacgagaagcgtatgcttcag
gaagccgtcgatgcactgcttgataacggtcgtcgtggccgcgcgatcacgggctctaac
aagcgtccgctgaaatcgctcgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtcgactactcgggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgtggtctgcccaagaaaatggcccttgagctgttcaagccgttt
atctactccaagctgcagtcgctgggctacgcctcaacgatcaaagccgccaagaagatg
gtcgagcgcgaactgccggaagtgtgggacatccttgccgatgttatccgcgagcatccg
gtgctgctgaaccgcgcacccacgcttcaccgtctgggcatccaggcgtttgagccgctg
ctgatcgaaggtaaagccattcagctgcacccgctggtatgtgctgcttataacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgacgctggaagcgcagcttgaagcc
cgtgcgctgatgatggccaccaacaacgtactgtcgcccgctaacggcgaaccgatcatc
gtaccgtcgcaagacgttgttctgggtctctattacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgaccttaatgaagttgagcgtgcttttggtactcag
tcagtatcgctgcacgcccgggtcaaagtgcgtctggacgaaatcgatatcgaagaagag
agcggcgagcgtagcttccaccgccgtatttacgatacgacggtaggccgtgcactgctg
ttccgcattctgcccgaaggtgtgcccttcgagctgatcgaccagccgatgaagaagaag
gcgatctccagcctgatcaacgaagtttatcgtcgtgccggcctcaagccgaccgtcatt
ttcgctgaccagctgatgtataccggtttccgtctggcgacctggtccggcgcctcaatc
ggtgttaacgacttcgttattcccgaagcaaaaactgaaatcgttgatgcagcggaagcc
gaagttaaagagatcgaagaccagttctcttctggcctggtaacagcgggtgagaagtac
aacaaggttatcgatatctggtccaaggccaacgataaagtcgccaaggcgatgatggtg
ggtatctctaaagagaccgtcatcgatcgtgatggtaacgaagttgagcaggactcgttc
aacagcgtcttcatcatggccgactccggtgcccgtggtagtgccgcccagatccgccag
ctggcgggtatgcgtggcctgatggccaagccggacggttcgatcatcgaaacgccgatc
gtcgccaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggtgca
cgtaaaggtcttgcggatacggcgttgaaaaccgccaactccggttacctgacccgtcgt
ttggtagacgtagcgcaagacctggtcatcaccgaagtcgactgtggtaccgaaaatggc
ttgaccctgcacccgatcatcgaaggcggcgacatcatcgtaccgctttcccagcgcgtg
ctgggtcgtgtcgtcgctcaggatgtagttcaccctggcagcggtgaagtattgatcgct
aaaggtaccttgctcgacgagaaatggtgtgccgagctcgacaccatgggtgtcgacgag
atcatcgtacgctctacgattacctgtgagaccgcacacggcgtgtgtgcctcctgttac
ggccgtgacttggcccgtggccatcaggtcaacatcggtgaagccgtcggcgttatcgcc
gcacagtccatcggtgagccgggaacccagttgaccatgcgtaccttccacatcggtggt
gcggcatcgcgttcgtcagccgtggatagcgtacaagtgaagcacggcggtaaggttcgt
ctgcacaacatcaagcacgttgagcgtgccgacggcaagctggttgttgtatcgcgttct
agcgccctggccgttgctgacgaccatggccgtgagcgcgagtactataagctcccttac
ggtgctgagctttctgtacgcgacggcgacgtggtcgacgctggtgcgacagtggccaaa
tgggatccgcacactcacccgatcgttgccgaagtagaaggtaaggcgcagttcatcgat
ctcgacgagggtgtcaccatgcaccgcagcgtcgatgagatgaccggcctctcctccatt
gaggtgatcgagtctgcagcacgtcccatggccggtcgcgacaagcgcccaatggttatg
ctgcaagacagctctggcgagtacgtctctgtatcgggctctaacaccccggttcagtac
ctgctgccgggtaactcgattatttcggtcgacgatggtgtgacgatcggggtaggtgaa
gtagttgcccgtatcccggtagaagcctcggcgaacaaagacatcaccggtggtctgccg
cgggttgctgacttgttcgaagcgcgtaagccgaaagagtcctcgatcctggccgagatc
agcggtgtgatcagcttcggtaaagagaccaaaggtaagcgccgtctgaccattactccg
gagtctggcgatccgtttgaagcgctgattccgaaatggcgtcaaattgccgtcttcgaa
ggcgaaactgtcgagaagggtgaggtaatttccgatgggccgagcaatccgcacgatatc
ctgcgcttgctgggtgttgaggagcttgccaagtacatcactgccgaagtacaggacgtt
taccgtctgcagggcgtaggtatcaacgacaagcacatcgaagtcattgtgcgtcagatg
ctgcgcaaggtagagattactgattcgggcgattctgacttcatcacgggcgaccaggct
gaactggttcgcgtgctggaacagaacgaacgccttgagaaagagaagaaattcccggcc
aagtatcagcgtatgctgctgggtatcaccaaggccagtctggccaccgagtcgttcatt
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcagcggtgaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtggttggtcgcctgataccggctggt
acgggcttgactcaccacgcagagcgtcgtcgcaagcgcgaagacgtagagcaactgttc
aatccttcggctaccgaagtcgaacaggagctgggtgctcagttgactgctctcgactct
gacgatgagctgtag
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