Halomonas sp. FeN2: KF947_13380
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Entry
KF947_13380 CDS
T10697
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hafn Halomonas sp. FeN2
Pathway
hafn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hafn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KF947_13380 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hafn03019
]
KF947_13380 (pcnB)
Enzymes [BR:
hafn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
KF947_13380 (pcnB)
Messenger RNA biogenesis [BR:
hafn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KF947_13380 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
UBR48354
LinkDB
All DBs
Position
complement(2906269..2907651)
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AA seq
460 aa
AA seq
DB search
MFKGFTRFLHSPGEQLKTLLDPQESTTNALTPRNIPRSEHPVSRQHISDAALKVLYRLSG
AGFDAYLVGGCIRDALLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREV
IEVTTFRGKPQDEHGDHIAHQSDEGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFSIT
DFANGAEDIKTRTLRLIGDPATRYREDPVRMLRAVRFAAKLDFTLDPATEAPMYDQAPLL
LQIPPARLFDEVLKLFMSGHGLVTFRLLSHYGLFGMLFPEAEEAMADAAWAEELIEQALT
NTDKRIAEERPVTPAFLLAAFLWAPVKHRQEALEQEGMPPIPALQAAAQQVVSRQLEFTS
IPKRFGIPMREIWELQQRLPQRRGKKAFQTREHSRFRAGYDLLLLREQAGEIPSGLGEWW
TAFQRGDEHEQRRLLQKVGGDPASQGDRRRKRRRKPSAPE
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaggatttacccgtttcctacacagcccgggggagcaattgaaaaccttgctt
gatccccaagagagcaccaccaacgccctcactccgcgcaacatccctcggtccgagcac
cctgtttctcgccagcacatcagcgatgccgcgttaaaagtgctttatcgccttagcggc
gcgggtttcgacgcctatttggtgggcggctgcattcgtgatgcgctgcttggcaagatg
cccaaagattttgatgtcgccaccaacgccacgccagagcaggttcgcgatctatttcgt
aactcgcgcctgatcggccgccgttttcggattgtccatgttcgctttggccgcgaggtc
attgaggtcaccaccttccgtggcaaaccccaagacgagcatggcgaccacattgcccac
cagtccgatgaagggttactgctgcgcgacaatgtgtggggcaatattgaagaagacgcg
ctgcgccgcgactttaccgttaatgcgctctactacaatatcgccgacttcagcatcact
gattttgccaatggtgccgaggatattaagacccgcaccctgcgcctgattggcgacccg
gcgacacgctaccgcgaagacccggtacgcatgctgcgggcggtgcgctttgcggctaag
ctcgacttcacgctagaccccgccaccgaagcgccgatgtacgatcaggcaccgctgctg
ctgcagattccaccagcacggctattcgatgaagtcctcaagctgtttatgtcgggccac
ggtttggtcaccttccggctactcagccactacggcctgttcggcatgctgttccccgag
gccgaagaagccatggccgatgccgcctgggccgaagagctgattgagcaggcgctgacc
aacaccgataaacgtattgccgaagagcgccccgtcaccccggccttcctgctggcagcg
tttttatgggccccggtcaagcatcgccaggaagcgctggagcaagagggcatgccgccc
attccggcgcttcaagcagccgctcagcaggtggtatcccggcagttagagttcacctcg
attcccaagcgctttggcatccccatgcgggaaatttgggaattacagcagcgcctaccc
cagcggcgcggtaaaaaggcctttcaaacccgcgaacattcgcgtttcagagcgggctat
gacctgctgctgctgcgcgaacaggcgggcgagatacccagtggtttaggcgaatggtgg
acggcgtttcagcgcggcgatgagcacgaacagcgtcgcctgctgcaaaaagttggcggc
gaccccgccagccagggcgaccgtcgtcgcaaacggcgccgtaagccgagcgcgccggag
tag
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