Halomonas sp. FeN2: KF947_13980
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Entry
KF947_13980 CDS
T10697
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hafn Halomonas sp. FeN2
Pathway
hafn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hafn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KF947_13980 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hafn03400
]
KF947_13980 (sbcB)
Enzymes [BR:
hafn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KF947_13980 (sbcB)
DNA repair and recombination proteins [BR:
hafn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KF947_13980 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KF947_13980 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KF947_13980 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
HTH_20
Motif
Other DBs
NCBI-ProteinID:
UBR48454
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All DBs
Position
3026588..3028081
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AA seq
497 aa
AA seq
DB search
MAPPNAAPASFLWHDYETFGADPRRDRPAQFAALRTDADLNEIGEPIELYCKPADDYLPH
PAACLITGITPQKAQRHGLPEAEFAGEIQRHMSEPGTCVVGYNSLRFDDEVSRHLFYRNL
LDPYSREWQNGNSRWDLIDVVRAFYALRPDGIEWPLREDGAPSFKLEHLTAANGIAHEGA
HDAVADVRATIALARLLKARNAKLFDYLLGLRGKRAVAKQLDLPNAKPLLHISRRYPASR
GCSALVMPLAEHPTNPNGVIVYDLSVDPSDMLSMSAEQIRERVFVSQQDLTEGEARIPLK
VIHINRCPVVFPASALKDVEGPQQGEYGAIVARLGLDVAACRQHWKTLRDASGVAAKVAE
VFSAGYDDAPQDPDLMLYSGSFFSAADRQQMERVREMEPWDLVGQRFAFQDPRLEEMLFR
FRARSYPDTLEGEEREQWEAFRWMRINDPALAGFTLKAFAREIAQYNQQTLTDRERQILE
ELVMFVEAMMPAQAFDA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccaatgctgcccctgccagttttctatggcatgactatgaaaccttcggg
gcggatccgcgtcgcgaccggcccgctcagttcgctgccctgcgcactgatgccgatctg
aacgagatcggtgagccgatcgagctctactgcaaacccgccgatgattacttgcctcat
cctgccgcctgtttgattaccggtattacccctcaaaaagctcaacgccatggtctaccc
gaggcagagttcgctggcgagattcagcgccatatgagtgagccgggcacctgcgtggtg
ggctataacagcctgcgttttgatgacgaagtctcccgccatctgttttaccgcaatctg
ctcgacccttattcccgtgagtggcaaaacggcaattcccgctgggatttaatcgatgtt
gtgcgcgccttttatgcactgcgcccggatggcattgagtggccgctgcgcgaagacggc
gcgcccagcttcaagcttgagcacttaaccgcggcgaacggcattgcccatgagggtgcc
cacgatgcggtagccgacgtgcgtgccaccatcgccttggcccgtttgctcaaagcgcgc
aatgcgaagctgttcgactatctactcggtctgcgcggtaaacgtgcggtggccaagcag
ctcgacctacccaacgccaaaccgctgctgcatatctcccgccgttatcccgccagccgg
ggctgtagtgcgttggtcatgccgctggccgaacatccaaccaaccctaatggggtgatc
gtttacgatttgagcgttgatcccagcgatatgttgagtatgtcggcggagcagattcgt
gagcgcgtgtttgtcagccagcaggatttaaccgaaggcgaggcgcgtattccgctgaag
gtgatccatatcaaccgctgcccggtggtgtttcccgccagtgccttgaaagacgttgag
gggcctcagcagggtgagtatggcgccatcgttgcgcgcttaggcttggatgtggcggcc
tgtcggcagcactggaaaaccctgcgcgatgccagcggtgttgccgccaaggtcgccgag
gtgtttagtgcaggttacgacgatgcgccgcaagacccggatctaatgctctattcgggc
agcttcttctccgccgccgaccgtcagcagatggagcgagtgcgagagatggagccgtgg
gatttggtggggcagcgctttgcgtttcaggatccgcgcttggaagagatgctgtttcgc
tttcgtgcgcgcagttaccccgacacgttggaaggtgaagagcgcgagcagtgggaagca
tttcgctggatgcggatcaatgatccggccttggcgggctttacgcttaaggcgtttgcg
cgggaaattgctcagtacaatcagcaaaccctcactgatcgtgagcgccagattctggaa
gaactggtgatgtttgtggaagccatgatgccggctcaagcgtttgacgcctga
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