Halomonas sp. FeN2: KF947_21955
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Entry
KF947_21955 CDS
T10697
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hafn Halomonas sp. FeN2
Pathway
hafn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hafn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KF947_21955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hafn03019
]
KF947_21955
Enzymes [BR:
hafn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KF947_21955
Messenger RNA biogenesis [BR:
hafn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KF947_21955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
Gag_p24
Sacchrp_dh_NADP
COMPASS-Shg1
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
UBR49931
LinkDB
All DBs
Position
complement(4777889..4779145)
Genome browser
AA seq
418 aa
AA seq
DB search
MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLNTGKRPTKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDAL
KAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQ
NLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDGLLGNIER
LIKQKLTKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGERKRRARR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggcctgcacgccgatttgttacgcgctgtcacagcgcaaggt
tacactgagcctaccccgatacaacgacaggctattcccgttgtactagaaggtcgtgac
atgctggccagcgcccaaaccggcacgggtaaaaccgctggttttacgctgccgatgctg
caacgcttaaacaccggcaaacgacctacaaagcgtcaggtacgtgcactagtgctaacc
cctacccgcgagcttgccgctcaagtaggcgaaagcgtgtcgacctacggtcaacatctg
gcactgcgctctcacattatttttggcggcgtcggccaacagcctcaaatcgatgcactg
aaagccggtttggatgtactggttgccactccaggccgcctgttggatcttcaccagcaa
gggcatgtggatctctcctgcgttgagattttagtgcttgatgaagctgatcgcatgctg
gatatgggcttcattcatgacattaagcggttgttgcgcctagtgcctaaaaagcgccaa
aacctgctgttctcagcgacattctctaacgagatccaaaccctggcgcaacagttgctg
gataacccggcgatgattgaggtagcgccacggaatgccacagccgacaaaattgagcag
gccatttaccgcgttgaccgcgagaagaagcgcgagctgctggctcacttgattcagcaa
catggctggttccaggtgctggtatttacgcgcaccaaacatggtgctaaccgccttgca
gagcagctctccaagcaggacatcccttcaatggcgatccatggcaataaaagccaggga
gcgcgcactcgcgcactaacggcattcaagagcggcgacctgcaggtactcgtggccacc
gatatcgctgctcgcggactggatatcaatgagttgccccacgtcgtcaattttgaccta
cccaacgtggcggaagattatgtccaccgcattggccgcaccggtcgggctggcagcaat
ggcgaagccgtttcgttggtgtgtgtcgatgaagacggcctgctgggcaatattgagcgg
ctaatcaagcagaagctaacaaagcacattgaacctggctttgagcccgaccccagtatc
aaacctgagcccatcgaaaatggccgtcgcaatcaacgtcagccccgcgccaaacgcaaa
cccgaaggccagagcgccaataccggcggcgaacgtaaacgccgcgcgcggcgctag
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