Halomonas sp. GFAJ-1: BB497_00100
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Entry
BB497_00100 CDS
T05375
Name
(GenBank) protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
hag
Halomonas sp. GFAJ-1
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hag03009
]
BB497_00100
Ribosome biogenesis [BR:
hag03009
]
Prokaryotic type
ribosomal protein modification factors
BB497_00100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
NatA_aux_su
Motif
Other DBs
NCBI-ProteinID:
AVI61218
UniProt:
H0IZF3
LinkDB
All DBs
Position
complement(24416..26599)
Genome browser
AA seq
727 aa
AA seq
DB search
MEIKVNYLDNLRLEAKFDDFTVISDQPIRYKGDGSAPGPFDYFLASSAMCAAYFVKVYCN
ARNIPTENIRLSQNNIVDPEDRYKQIFKIQVELPEDISEKDRQGILRSIDRCTVKKVVQT
GPEFQIETVENIDEDAQALLMGAPEGSTTYIPGKDLPLEQTIANMSAMLAELGMKIEIAS
WRNIVPHVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQFFGEEI
AGSDFVHYPNEKWFQPGPNDELPNEILDEHCLAIYNPEGELCGSHLIDTNSGREDRGIVS
LPFVRQSDGETVYFPSNLIENLYLSNGMSAGNTLVEAQVQCLSEIFERAVKREILEQELT
LPDVPQEVLAKYPDILEGINALEAQGFPVLVKDASMGGQFPVMCVTLMNPRTGGVFASFG
AHPSFEIALERSLTELLQGRSFEGLNDLPLPTFNSQTVSEPNNFVEHFIDSFGVVSWRFF
SATPDFEFSEWDFSGSNEEEAATLFGIFAELDAEVYMAVHEDLGAPVCRILVPGYSEVYP
IEDLIWDNTNKALDYREDILNLHRLDDDQLTDLVERLEESQMDDHADIITLIGIEFDENT
VWGQLTILELKLLVYLALQRHEEALDCVQMFLQYNDNTVERGLFYQAVNAVLEIALDDEL
ELKDYLPNFQRMFGEATMAAVVGSVSGEVRFHGLTPTNMQLEGLERHQRLIESYKKLHAA
RAAKANS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaaagttaactatctcgataacctccgcctagaggctaagttcgacgacttc
acggtgatttctgaccagccgattcgctacaaaggcgacggctcggcccctggcccgttt
gactacttcctggcgtcttctgccatgtgtgccgcttactttgtaaaggtgtactgcaac
gcccggaatatccccaccgagaacatccgcctttcccagaacaatatcgtcgacccggaa
gatcgctataagcagatttttaaaatccaggtcgagctgccggaagatatctccgaaaaa
gatcgccagggcattttacgctccattgaccgctgcaccgttaagaaagtggtgcaaacc
ggccccgagttccagattgaaacagtcgaaaatatcgatgaggatgcccaggcactgtta
atgggcgccccggaaggcagtactacctacattccgggtaaagacctgccgctagaacag
accatcgccaatatgagtgcgatgctggccgagctaggcatgaaaatcgagatcgcttcc
tggcgtaatattgtgccccacgtctggtcgctgcatattcgtgatgctgcttcgcccatg
tgctttaccaacggcaaaggcgccaccaaagagagcgcgctgtgctcggctctgggtgag
tttatagagcgcctgagctgcaacttcttctataacgaccagttctttggtgaagagatt
gcgggcagtgattttgttcactaccccaatgaaaagtggttccagccggggcctaacgat
gagctgcccaacgaaatcctcgatgagcactgtctggccatctacaacccagaaggtgaa
ctatgcgggtcgcacctgattgatactaactccggccgcgaagaccgaggcattgtatcg
ctgccgtttgtgcgccaatccgatggtgaaacggtctacttcccctcgaatctcatcgaa
aacctttatttaagcaatggcatgagcgccggtaatacgctggtagaagcccaggtgcag
tgcctgtcggaaatttttgagcgggcggtaaagcgggaaatccttgagcaggagctaacc
ctgcccgacgtgccccaggaggtgcttgccaagtacccagacatcttggagggcattaac
gccctggaggctcaaggcttcccagtgctggtgaaagatgcctccatgggcggtcagttc
ccagtgatgtgcgtgacgctgatgaacccacgtaccggtggcgtgtttgcctcttttggt
gcccacccaagctttgaaatagccctagagcgcagcctgaccgagctgctccaaggccgc
agctttgaaggcctgaatgacctgccgttgccgacgtttaactcccaaaccgtgtccgag
cccaacaactttgttgagcactttatagactctttcggcgtggtgtcctggcgcttcttt
agcgcgacgcctgattttgagttcagcgagtgggacttctcaggcagcaacgaagaggaa
gccgccacgctgttcggtatttttgcagagctagatgcggaagtgtatatggcggtacac
gaagacctgggcgcgccggtctgccgtattttggtgccgggctactccgaggtgtacccc
attgaagatttgatttgggataacaccaataaggcgctggattaccgcgaagatattctc
aacctgcatcgactggatgatgatcagctcaccgacttggtggagcggctggaagagagc
cagatggatgaccacgccgatatcatcacgctgattggtattgagtttgatgagaacacc
gtgtggggacagctgacgattctggagctaaagctgctggtgtatctggccctgcagcgc
catgaagaagcgttggactgtgtgcagatgttcctgcagtacaacgacaacaccgtggag
cgcggcttgttctatcaagcggtgaacgcggtgctggaaattgcgctggatgacgagctg
gagcttaaagactacctgcccaatttccagcgcatgtttggcgaggccaccatggcggcg
gtggtgggctcagtcagtggcgaggttcgcttccacggcctcacgccaacgaatatgcag
ttagaaggcctagagcgccatcagcgcctgatcgaaagctataaaaagcttcatgcggct
cgggcggcaaaggcgaatagctaa
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