Halomonas sp. GFAJ-1: BB497_01055
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Entry
BB497_01055 CDS
T05375
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03430
Mismatch repair
hag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_01055
03430 Mismatch repair
BB497_01055
03440 Homologous recombination
BB497_01055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_01055
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_01055
Enzymes [BR:
hag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BB497_01055
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BB497_01055
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BB497_01055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
OB_POT1A
Motif
Other DBs
NCBI-ProteinID:
AVI61391
LinkDB
All DBs
Position
complement(240364..243867)
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLISTTAERGMPALALTDEANLFGLVKFYKAAQGAA
LKPIIGSDLWLHNPNDDAHPYRITLLAMDGVGYRNLTELISKGWSEGQRQGRAILDKQWV
LDQSDGLIALSGGREGEIGRHLLSEHEREARLLLEEWQRAFPDRFYLELIRTGRPLEEEC
VHASVQLAIESNTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHDGL
TERLDFLFPAEQYPRDSETFREIDQRYRDRLEFELNVIIQMKFPGYFLIVMDFIQWAKDN
GVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IDYVADRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIEKDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALKMVDKVRGVNGQEPLNIDAIPLDDG
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCADNGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPDVNVGGYRFTVDTEGRVVYG
LGAIRGVGEGPIGAIVEARNTDGPFKDLFDFCRRLDPKRMNKRTLEALIRSGALDTLGPN
RAVLAAAMEDALKAAAQNHANQNLGMLDMFGESFSAEEEASDPYAEYHNAREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFEQLRGQIESDQVIIVEGEVSNDDFSGGMRLRGKDVTPMV
TARIRYGQAVELALDAEQINGRLVESLRDSLTPYRDEAGLPVRLQYRHPDAVAWLELADE
WKVAPSDDLLLALRDVQGQAGVQLRYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgttcgttcatctacgtttgcacagtgaatactctctggttgatggcttg
gtcaaactcaagtcattgatcagtaccaccgctgagcgcgggatgccggcgttggcattg
accgacgaggccaacctgtttggcttggtgaagttttacaaagccgcccaaggagccgcg
cttaagcccatcattggcagtgatttatggctgcataaccccaatgatgatgcgcatccg
taccgtattacgctgctggccatggacggggttgggtaccgcaacctcaccgagttaatt
tccaaagggtggagtgagggccagcggcaggggcgcgctattctggataaacagtgggtg
ctagatcaaagcgacggcttgatagccctctccggcggtcgtgaaggggagattggccgc
cacttattatctgagcatgaacgtgaagcacggctgttgctggaggagtggcagcgcgcc
tttcctgatcgcttctacctagagctgattcgtacggggcggccgcttgaggaagagtgt
gttcacgccagtgttcaactggccattgagtcaaatacgccggtagtcgccactaacgac
gtacggtttttagagcgtgaggacttttgggcccacgaaacccgcgtggcgattggcgaa
ggcaaagcgctagacgacccgcgtcgcgagcgccgttataccgaagaacagtacctgaaa
agccccgaggaaatggccgcactgtttgctgacatacctgaggcgctagaaaacagcgta
atgatcgccgagcgctgcagcgtggatgtgcgcctgggtgagattttcctacccgagttc
gaaattcccgaaggcatgacccaggatgagtttttccgcaaggtctcccacgacggttta
accgagcggctggattttctttttcctgccgagcaatatccccgtgatagcgagacattt
cgtgagatcgaccagcgctaccgggaccggcttgagtttgaactgaacgttattatccag
atgaagttcccaggttacttcctgatcgttatggactttattcagtgggccaaggataac
ggcgtaccggtagggccggggcgtggttcgggcgcggggtcgctggtggcctatgcgcaa
aaaatcaccgaccttgaccccattggttacgacctgctgtttgagcgctttctaaacccc
gagcgtgtctccatgcccgactttgacgtcgatttctgcatggaaaagcgcgacaaagta
attgactacgtcgccgaccgctacggtcgtaatgcggtttcccagattgttaccttcggt
accatggccgccaaggcggtggtgcgcgatgtggctcgcgcccagggcaggccctattcg
ctgggcgacaagctctcgaagctgattccctttgaagtgggcatgacccttgccaaagcg
attgaacaagagcccgcgctaaaagagttcatcgagaaggacgaagaggccgaagagatc
tgggagatggcgctcaagctagagggcaccacccgaggcaccggcaagcacgccgggggt
gtggtgattgcgcccaccaagctgaccgacttttcgccgctgctttgtgatgaagatggc
tcaggcttagtggttcagtttgataaaaatgacattgaagaagctgggctggtcaagttt
gacttcctcgggctgcgtacgctgacgattatcgactgggcccttaaaatggtcgataaa
gtgcggggtgttaacggccaagaaccgctgaatatcgacgccattccgttagacgatggc
aaaacctttgagatgctcaagcgggctgaaactaccgccgtcttccagttggaatctcgc
ggtatgaaagagctgatcaagcgcctgctgccggattcgttagacgatatgatcgctctg
gtggccctgttccgcccagggccgctgcagtcgggcatggtagatgattttatcaaccgt
aagcatggccgcgctgaagtctcttatccacaccctgattatcagcacgaactgttgaaa
ccggtgctaagccccacctacggcattatcttgtaccaagagcaggtcatgcagatcgct
caggtgatggcgggatattcgctggggcaggcggatatgctgcgccgcgccatgggtaag
aaaaaacccgaagagatggccaaacagcgcgcaggctttatggaagggtgcgccgacaac
ggcatcgacaaagatctggcgggcaacatcttcgatctagtggagaaatttgcgggctac
ggttttaacaagtcccactccgcagcttacgccttggtgtcgtatcaaaccgcctggctg
aaggctcactacccagggccgtttatggccgcggttatgtccacggaaatggataacctg
gataaagtggtgccgttaattgaggagtgccgcaacctcaagcttaccgttaccccgccg
gatgttaacgtcggtggttacagatttactgtcgataccgaaggccgtgtggtgtacggg
ctgggggcgatacgcggtgtcggcgaagggccgattggcgccattgttgaggcccgcaat
accgatggcccgttcaaagatctgtttgatttctgtcgccgcctcgaccccaaacggatg
aataagcggaccttggaagcgctgattcgatcaggggcgctggatacgcttgggcccaac
agggcagtgcttgccgccgccatggaagacgccctaaaagccgctgctcaaaaccacgcg
aaccagaacctgggtatgctggatatgttcggtgagtcgttcagcgcagaagaggaagca
agcgacccttacgctgaatatcataacgcccgtgaatggactgaccgcgagcggctctca
ggggaaaaagataccctgggcctctacctgacaggtcacccaattgatgagtacgagcgg
gagctaaaacgctttgtctcgacacgcatcagcgatctaaaaccttcccgcgagccgcag
cgggtggcggggctggtagtggcgatgcgtacgatgaagtctaagcgtggcgataccatg
gcatttatcaccttggatgaccgtaccgggcgcattgaagcctcgctgtttggtgaattg
tttgagcagctacgcggccagattgagtctgatcaggtgattattgtcgaaggtgaggtc
tcaaatgatgacttttctggcggcatgcgcctgcgtggcaaagacgtaacgcccatggtg
acggctcggatacgctacgggcaggcagtggagctggcactggatgccgagcagatcaac
ggccggttggtggaaagcctacgcgacagcctcaccccctaccgggatgaagcgggcttg
cccgtgcgtttgcagtatcgccacccggatgcggtggcatggctggagctagccgatgag
tggaaggtagcccccagcgatgacttgctgcttgcgctgcgcgatgttcaaggacaggca
ggtgtgcaactgcgctatcgataa
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integrated database retrieval system
