Halomonas sp. GFAJ-1: BB497_02225
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Entry
BB497_02225 CDS
T05375
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB497_02225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hag03019
]
BB497_02225
03016 Transfer RNA biogenesis [BR:
hag03016
]
BB497_02225
Enzymes [BR:
hag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BB497_02225
Messenger RNA biogenesis [BR:
hag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BB497_02225
Transfer RNA biogenesis [BR:
hag03016
]
Prokaryotic type
tRNA degradation factors
BB497_02225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH-I_KHDC4-BBP
KH_Mug60-KHD4
Motif
Other DBs
NCBI-ProteinID:
AVI61602
UniProt:
H0J585
LinkDB
All DBs
Position
complement(509883..512045)
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AA seq
720 aa
AA seq
DB search
MLKEVAVNPVKKTFQYGRSTVTLETGRIARQATGAVMVTMDETVVLCTVVAKKEANPNQP
FFPLSVHYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPKGFMNEVQVIC
TVLSTDRNHDPDVAAMLGTSAALSISGVPFNGPIGCARVGFNEEQGYFLNPTVEELAASE
LDMVVAGTDKAVLMVESEAQELLEDEMLGAVLFGHQEMQVAVTAIKELVAEAGKPRWDWQ
PAPENVALKTAMAEAFEAKVGDAYRITDKMARQDALSALKDAAVEQLAAVEGEEAEGKFS
KDDVKGAFAGLEKRVVRSRVVKGEPRIDGRDNSTVRPLAIEVGVLPKTHGSAVFTRGETQ
AIAIATLGTLRDSQLIESLEGERKDRFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLARR
GIQAMLPSEDVFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLV
KDEDGYAVLTDILGDEDHLGDMDFKVAGSEEGVTALQMDIKIEGINEEIMEKALQQAHDA
RISILAQMNDVISQSRTDVSENAPSMATIKIAPDKIRDVIGKGGATIRKICEDTGASIDL
DDDGTVRIYAEDKAAAKRAIDTVLAITAEAEIGKLYNGKVVRIADFGAFVNIMPGTDGLV
HISQIVAERVNNVRDFLNEGDDVIVKVLDIDNRNRVKLSIKEITEEEKAAFAAAEAEVTE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaggaagtcgccgtgaatccggtaaaaaaaacgttccaatacggtcgtagcacc
gtcactttagaaactggccgtattgctcgccaggccactggtgccgtaatggtgaccatg
gatgaaaccgttgtactgtgtacagtggttgcgaagaaagaagccaaccccaaccagccc
ttcttcccgctctcggtacactaccaagagaaaacctacgcggttggtaagatccccggt
ggcttcttcaagcgtgaaggccgtcctaccgaaaaagagaccctcacctcgcgcctgatc
gaccgcccgatccgtccgctattccccaaagggtttatgaacgaagtgcaggtgatctgt
accgttctctctaccgaccgtaaccatgacccggatgtggcggcgatgctgggcacctca
gcggcgctgagtatctctggcgtgccgtttaacggcccgattggctgtgcacgggttggt
tttaacgaagagcagggctacttcctgaacccgaccgtggaagagctggctgcttccgag
ctggacatggtggtagcgggtactgataaagccgtcctcatggtggagtcagaagcccag
gaactgctcgaagacgaaatgctgggtgccgtgctgttcggccaccaggaaatgcaggtt
gccgtcaccgcgattaaagagttggtcgctgaagctggcaaaccgcgctgggattggcag
cctgcgccggaaaatgtagcgctgaaaaccgccatggccgaagcgttcgaagccaaagtg
ggcgatgcgtaccgcattaccgacaaaatggcccgccaagacgcgctttcagcacttaaa
gatgccgctgttgagcagctagcggcggttgaaggcgaagaagcggaaggcaaattcagc
aaagatgacgtgaaaggtgcgtttgccggccttgaaaagcgcgttgtacgctcgcgcgtt
gtaaaaggcgagccgcgtatcgatggccgtgacaactccaccgtgcgcccgctggccatt
gaagttggcgtactgccgaaaacccacggctctgcggtgtttacccgtggcgagacccag
gcgattgcgattgcaaccttgggcaccctgcgtgattcgcagctcattgaatccctggaa
ggtgagcgtaaagaccgctttatgctgcactacaacttccctccctactgcgtaggtgaa
gcgggctttatgggtggcccaaagcgccgcgaaatcggccacggccgtttggcgcgtcgt
ggtattcaagccatgctgccgtctgaagacgtcttcccttacactattcgcgtggtgtcg
gaaattactgaatccaacggttcaagctccatggcctcggtgtgtggctcttcgcttgcg
ctgatggatgccggtgtaccgctgaaagccccggtggcgggtattgccatggggctggtg
aaagacgaagacggctacgccgtacttaccgatatcctgggtgacgaagaccacctgggc
gacatggacttcaaagttgccggttctgaagagggcgtcaccgctctacagatggacatt
aagatcgaaggcatcaacgaagagatcatggagaaggcgctgcagcaggcgcacgatgcg
cgtatcagcattctggcgcagatgaacgacgtgatcagccagagccgtaccgatgtgtcg
gaaaatgctccttccatggccaccatcaaaatcgccccggataagatccgtgacgtcatt
ggtaagggcggcgcgacgattcgtaaaatctgtgaagacaccggcgcgtctatcgacctg
gacgatgacggcaccgtgcgcatctacgcggaagataaagccgcggcgaagcgtgccatt
gataccgtactggccattaccgcagaagcggaaatcggcaagctgtacaacggtaaagtg
gtacgtatcgctgacttcggcgcgtttgttaacatcatgccgggtaccgatggcttggtg
catatttcgcaaattgttgccgagcgcgttaacaacgtccgcgacttcttaaacgaaggc
gacgatgtgattgttaaagtgctggatatcgacaaccgcaaccgggtgaaactctctatt
aaagagatcaccgaagaagagaaagcggctttcgccgccgcagaggcagaggttaccgag
taa
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