Halomonas sp. GFAJ-1: BB497_07615
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Entry
BB497_07615 CDS
T05375
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB497_07615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hag03019
]
BB497_07615
03009 Ribosome biogenesis [BR:
hag03009
]
BB497_07615
Enzymes [BR:
hag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB497_07615
Messenger RNA biogenesis [BR:
hag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB497_07615
Ribosome biogenesis [BR:
hag03009
]
Prokaryotic type
rRNA helicases
BB497_07615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVI62579
UniProt:
H0IY96
LinkDB
All DBs
Position
1670129..1671841
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQIIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKNAQRVFFSATLPAEIERIVNRYLVDPVKVAIESRTTTGENIEQRIVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVARITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAI
ELACAFAAMARADEAPIGRLQAPRKEKPMRDGAPAGKPGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccttcgcccatccaggcgcagactatt
cctgcgttgttggaaggccgcgatatgctgggccaagcacaaaccggtaccggcaaaacc
gctgcgtttgcactgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ttggttatggctccgacccgtgagcttgctcagcaggttgcggcttcgttcagtaagtat
ggccaaaaccttaagggtcttgaagttgcgatcctatgtggtggtcaagagtaccgtgag
cagttaggtgcgctaaaacgtggtgcccaaattatcgttggcacccctggccgcatcatc
gatcaccttgatcgtggcagcttgaaacttgacggcctttcagcgctcgtgctggatgaa
gccgatgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaaaatgcacagcgcgtgttcttctcggcgacgttgccggcagaaatcgagcgcatt
gttaaccgttatcttgttgacccggttaaggtggcgattgagtcgcgtacgaccaccggc
gaaaacatcgaacagcgcattgtccgcgttgatggtggcgcaaagcttgaagccctggca
cgtattctggaagttgagccagttgatggggccatcgtgtttgtgcgaacccgtgcggcc
tgtaccacgctggttgaacagctaacggcccgtggtgttaacgcggcaggcctatcgggt
gatctcgatcagagccttcgtgagcgcaccattacacgcttgaagcgcggcaaagttgat
gtgctgattgcgacagacgtcgccgcgcgtggtcttgacgtggcgcgtatcactcacgtt
attaactacgacctgcctcaggatgcggaagcctacacccaccgtatcggtcgtactggc
cgtgcgggtcgtagcggcatcgcgattactttcgctggcttccgtgaaggccgcaaagtg
ggctggatggagcaggcaacggggcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctattcgtgcccatcgcgatgaagtgttccatcaccgcgttgttgcagcgctgaccaaa
ggcgctgaagagcagcgtgcgctggttgagcgcttggtcgaagagggccacgatgccatc
gagctagcctgtgcgtttgccgccatggcgcgtgctgatgaagcaccgattggtcgctta
caggcgccgcgcaaagagaagccgatgcgtgacggcgcaccggctggtaagccgggggct
cgtcgtgagcgttcaagcgcgcctagcgaaggcatgacccgctaccgcgtttccgttggc
cataaagatggcgtgaagccaggtcaactggttggcgcactggcaaacgaaggcggtatt
gaaggtgcgcgtatcggtcgtatcgatatccgcaacgctttctcggtagttgaactaccc
agtggcctgccttccactattctggcgaaaatggcccgtgcccgcgtggccggtcgtccg
ctagaaattagcgaagatagcgcccctgagcgtgcaccacgccgtcgtcgtgacgatggt
gacgcgccggttcgtcgccgcgaacgcgcttaa
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