Halomonas sp. GFAJ-1: BB497_11010
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Entry
BB497_11010 CDS
T05375
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB497_11010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hag03019
]
BB497_11010
Enzymes [BR:
hag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB497_11010
Messenger RNA biogenesis [BR:
hag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB497_11010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_30
HEAT_12
Motif
Other DBs
NCBI-ProteinID:
AVI63185
LinkDB
All DBs
Position
2446194..2447468
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AA seq
424 aa
AA seq
DB search
MSESEQTTASAQNRKPKRRRRKPRRRQSNWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
AQGFEYCTPIQAEALRQTLLGGDIVGKAQTGTGKTAAFLISVMAYFLEEPTPDGQKPGAP
RALIIAPTRELALQIEKDAKALARFTQLNVASVVGGMDYQKQRESLGSKIDILVATPGRL
LDFHQKRDIDLSEVEVLVLDEADRMLSMGFIPDVKRIIRYTPKKEERQTFLFSATFTDDI
LSLASQWTLDPAHVEIEVTVENQADIDQRVYLVSDDDKERLLVNLLEQESFERVMVFGNR
RDLVRKLDSLLKKAGVSVAMLSGDVPQNQRIKTLESFREGEIQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERYINGKLPCEHPP
EGML
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaacagaccacagcatcggcccagaaccgcaagcctaaacgccgccgt
cggaaaccgcgtcgtcgtcagtcgaactgggatcttcgtcagtttcaggtgcccgccgtg
gccggcaagtggcgcttccatgactttgatctgccgctgccgttaatgcgcgctattcat
gctcaagggtttgaatactgcacgcccattcaagcggaagcccttcgccaaacgctgctg
ggcggcgatattgttggcaaggcgcaaaccggaacgggtaagactgctgcgtttttaatt
tcagtaatggcctactttttggaagagccaacaccggatgggcagaaaccaggtgcgccc
cgcgcgctgatcattgcgcccacccgtgaattggcgctgcaaatcgaaaaagatgccaaa
gccctagctcggtttacccagctaaatgtcgccagcgttgtgggcggtatggactaccaa
aagcagcgtgaaagtctaggcagcaagatcgatatcttggttgccacgcctggccgcctg
ctagattttcatcagaaacgcgatatcgatctttcagaagtggaagtgctggtgttggat
gaagcggatcgcatgctttccatgggctttattcccgatgtgaaacggatcattcgctat
acgcctaaaaaagaggagcgccaaaccttcctcttctcggcgaccttcaccgacgatatt
ctgagcttggctagccagtggacgctcgatcctgcccacgtagagattgaagtgaccgtt
gagaaccaagcggacatcgaccagcgcgtctacttggtgtctgatgatgataaagagcgc
ctgctggtgaatttgcttgagcaagagagcttcgagcgagtcatggtgtttggtaatcgc
cgtgatctcgtgcgtaagctggatagtcttctcaagaaagcgggcgttagcgttgccatg
ctgtcgggagatgtaccgcagaaccagcgtatcaaaacccttgaaagcttccgcgaggga
gagattcaagtgctggtggccactgacgtagccgggcgcggcattcatattgaagacgtc
agccatgtgatcaactacaccttgccggaagacccggaagactacgttcatcgtattggc
cgtactggccgtgccggagcaaaaggcgtttcgattagctttgtaggtgaagaggatgcg
ttctccttgcctgagatcgaacgctatatcaatggcaagcttccctgcgagcacccgccg
gaaggcatgctgtaa
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