Halomonas sp. GFAJ-1: BB497_11930
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Entry
BB497_11930 CDS
T05375
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03430
Mismatch repair
hag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_11930
03430 Mismatch repair
BB497_11930
03440 Homologous recombination
BB497_11930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_11930
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_11930
Enzymes [BR:
hag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BB497_11930
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BB497_11930
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BB497_11930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Rv2179c-like
PAS_4
MASE1
PAS
Motif
Other DBs
NCBI-ProteinID:
AVI63354
LinkDB
All DBs
Position
complement(2663601..2665664)
Genome browser
AA seq
687 aa
AA seq
DB search
MTKGGLPKRQRLIGLWLILSGISLLGGAIFAAWLDAQLAPTGLTRLALWLGSFSGGATIF
LVGLLLERMLFTPLRHLQVQLARLVANPDARDEHPPEGWLKALAPDLRRVRESWRIDRSR
LATAHAEGARSAARIRQELETLLQVLETPLLLCDHHRRLMLFNQAAEDFFEGNTGLGLGK
RLEALLPVGSLQNALSQLPSDGSPRELLTPCDNRWLKVILRRVPGSDGETLLTFSDATAS
WSSEMGVRAELASMLTPLRQHTASLTSAADALTQLRHQNDTDTSLLRQRFERVIHEEGTT
LGDNVAKIGQLLDDLQHQGERLTPMWSNDFWQALDERLDPEHRLITPVGMPAWFKGDAPA
LIALFDSLVKQLSAHLPDSGFEGEICLGNKRVYLDLIWQGKALPEHELAAWQHQPIASLP
LTPKVADVLRQHASDIWSLADDDGLHARLRMPLPAIERVGAPREPAPPRPEFHDFGIADL
PPPDEALANRSLRSLDVVAFDTETTGLELRRGDTVISLGACRVVNARLLASDVFDQKVDP
KRPIPPASTAIHGLTDADVAGAPPLDIVLTHFRDYIGEAVLLAHNAAFDLLAISHKGVAF
DNPVIDTLLISRALDEALDGHDLDSLAKRYDLAFPPGTRHTALGDARVTAELWLALLPRL
EARGIDTLEQLLTLQANAFDRQDASAS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaggcgggctgcctaaacgccaacgcctgattggcttatggcttattctcagc
ggcattagcctgcttggcggcgctatttttgccgcttggctagatgctcaacttgcaccg
acgggcttaacacggctggcgttgtggctgggcagcttttccggcggcgccacgattttt
ctggtgggtttactcctggaacgcatgctatttaccccacttcgtcaccttcaagtgcag
ctggcccgcttagtcgccaaccccgacgcccgggatgagcacccgccagaaggttggctt
aaagcgctagcccccgacctacgccgcgtgcgtgaaagttggcgtattgaccgcagccgc
cttgccactgcccatgctgaaggtgcaagaagcgcggcgcgcattcgccaggaacttgaa
actcttctacaggttcttgaaacgccgctgctactgtgtgaccaccatcgtcgactgatg
ctatttaaccaagcagccgaagacttttttgaaggcaacacaggactaggcttaggcaaa
cggctggaagccctgctgcccgtaggcagcctacagaatgcacttagccagttgcccagc
gatggctcgcctagagaattgctcaccccctgtgataatcgctggctaaaagtaattctg
cgacgcgtacccggtagcgacggtgaaactctgctgacctttagcgatgccacggcgtcg
tggtccagcgaaatgggcgtacgcgcagagctagccagcatgctaacgccgctacgccag
cacaccgccagcctcaccagtgccgctgatgccctgactcaactacgccatcaaaacgat
acagatacgtcactgctgcgccagcgcttcgagcgggttattcacgaagagggcactacg
ctaggtgacaacgtggccaaaattggccaactgctggatgatttacagcatcagggcgag
cgattaaccccgatgtggtcgaacgacttctggcaagccttagatgaacgcttagaccca
gagcatcgactaatcacgccagtaggcatgcccgcctggtttaaaggggatgccccggca
ctcatcgccctgtttgattcactggtaaagcagctaagtgctcacctccccgacagcggc
tttgagggtgaaatatgcttgggcaataagcgggtctatctagaccttatttggcaaggc
aaagcgttacccgaacatgaactcgccgcatggcaacatcaacctatcgccagcctaccg
ctaacacccaaagtggccgatgtactgcgccaacacgcgagcgatatctggagcctagcc
gatgatgatggcttacatgctcggctgcggatgcctctccccgccattgagcgggtaggt
gccccacgagagcctgccccaccgcgacctgagtttcacgactttggtatcgctgatctg
ccccctcccgatgaagcattggccaaccgctcgcttcgcagcttagacgtggttgccttt
gatactgaaactaccgggcttgaactacgccgtggcgatacggtaatcagccttggggcc
tgccgagtggtcaacgcacgtctgctagccagcgatgtgtttgaccaaaaggtggatccc
aaacggcctattcctccagcgagtaccgctattcacggcctcacagatgccgatgtcgcc
ggcgcgccgccgctggatattgtacttacccattttcgcgactacatcggggaggctgtg
ctactggcccataacgctgcctttgaccttttagccattagccataaaggagtcgcgttt
gataacccggtgatcgacactttactcatctctcgggcgctagacgaagcgctagacggg
cacgacctggatagccttgccaagcgttacgacctagctttcccacccggtacccgccac
actgcattaggtgatgccagggtcaccgccgagctatggctagcgctgctaccacgcttg
gaagcccgcggcattgatacgctggagcagctgctaacgctgcaagccaatgcgtttgac
cgacaggatgctagtgcctcatga
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