Halomonas sp. GFAJ-1: BB497_12805
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Entry
BB497_12805 CDS
T05375
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03430
Mismatch repair
hag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_12805
03430 Mismatch repair
BB497_12805
03440 Homologous recombination
BB497_12805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_12805
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_12805
Enzymes [BR:
hag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BB497_12805
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BB497_12805
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BB497_12805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AVI63515
LinkDB
All DBs
Position
2842885..2844309
Genome browser
AA seq
474 aa
AA seq
DB search
MSEAPLIFIDVETTGTRATRDRITEVAALKVVDGSITERWSSLINPGCKIPAHISQLTGI
KDGMLTHAPSFQQVAAEFRQWLGDGRLVAHNARFDYSFLRNEFKRSGIDFRATLICTLRV
SRRLAPQAAQHNLAALVERYAIAVDRHHRAEDDALALWQLWQAWQRLYDKATWQAALGDE
QRHRSLPAHLDSTQLEGLPSTPGVYLFYGHNRLPLYVGKSINLRSRVLGHFQRDYQDDKE
MRLAQQIQHVEWEETAGDMGAQLREAQLIKQLMPIMNRQLRRQGKLNTWHWPAKQHAPTL
INGSALGQPQSGSFYGLFRSAKEAKDTLRSLSETHQLCPQVLGLEKGKGRCFANQLGKCK
GACCGKEGMKEHTQRAQEAMEKLQVGTWPWPGRIVIREKGQNTRSNAYHVVDHWCYLGRT
GTLTAARKLIASNPQFDADTYRILNRFLRNPEQHCLKITQLENQPASMPKTAPR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagcaccgttaattttcattgatgtagagaccaccggcacacgagccacccgt
gaccgcatcactgaagtggcagcgttgaaggtagttgatggcagcatcactgagcgctgg
agcagcttgattaaccctggatgtaaaattcctgcgcacatcagccaactgacaggaatt
aaggacggcatgctcactcatgccccctcgtttcagcaggtagcagctgagtttcgccag
tggttgggggatggccgtttagtcgcgcacaatgcacgctttgattacagctttctgcgc
aatgaatttaagcgttcaggcatcgacttccgcgccacgttaatctgcacattacgcgtt
tcaagacgccttgcccctcaggcagctcagcacaacctcgcagcgcttgtggagcgctat
gcaatagcggtggaccgccaccatcgggcagaagatgacgcgttagcgctatggcagctg
tggcaagcgtggcaacgcctctatgacaaggctacctggcaggctgcccttggcgatgaa
cagcgccaccgcagcttacccgcccatttagatagcacacagcttgaagggttaccctca
acgcctggcgtctatctcttttacggtcataaccgactacccctttatgttggcaaaagc
atcaatttacgcagccgcgtgctgggccactttcagcgcgattaccaagatgacaaagaa
atgcgcctagcccaacaaatacagcatgttgagtgggaagagacggcaggcgacatgggc
gcccaacttcgagaggctcagctgattaagcaactgatgcccataatgaaccgacaactt
aggcgccaaggaaaattaaacacctggcactggccagccaagcaacacgctcccactttg
attaatggcagcgccctggggcagccccaatcaggtagcttttacggactttttcgcagc
gccaaagaagctaaagacacactgcgctctctgagtgaaacgcaccagctatgtccacag
gtacttggcttagaaaaaggtaagggccgctgctttgccaaccagctgggtaaatgcaaa
ggtgcttgctgcggtaaagagggaatgaaagagcacactcaacgtgcacaggaagcaatg
gaaaaactccaggttggcacttggccatggcctggccgaattgtgatccgtgagaaaggc
caaaacactcggagcaatgcgtatcatgtggtagatcactggtgctacctaggtcgcaca
ggaacgttaactgcggctagaaagcttatcgcttcaaacccacagtttgatgccgacact
taccgtatcctaaatcgattcctacgcaacccagagcaacactgtctaaaaatcacccag
cttgagaatcagccggcctcaatgcctaaaactgcgccgcgataa
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