Halomonas sp. GFAJ-1: BB497_13325
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Entry
BB497_13325 CDS
T05375
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB497_13325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hag03019
]
BB497_13325
Enzymes [BR:
hag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BB497_13325
Messenger RNA biogenesis [BR:
hag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BB497_13325
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
Gag_p24
Sacchrp_dh_NADP
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVI63614
UniProt:
H0IYP4
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All DBs
Position
2960125..2961378
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AA seq
417 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQLKAIPVVLEGRDLLASAQTGTGKTAGFTLPML
QRLANGKRPAKRQVRALVLTPTRELAAQVGESVSAYGQHLALRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLQQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQ
NLLFSATFSNEIQALAQQLLVNPALIEVAPRNTTAERIEQAIYRVDRDKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEHGLLSGIER
LIKQTLPKRIEPGFEPDPNAKPEPIENGRRGQRQPRAKRKPDGQSASSSGERRRARR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtctgcacgacgatttactgcgcgccgttaccgcgcaaggc
tatacccagccaacccctattcaattaaaggctatccccgtagtactggaggggcgtgac
ctactcgccagtgcccaaaccggcacaggtaaaacagctggttttacgctaccgatgctt
cagcggctcgctaacggcaagcgccccgcgaaacgccaagtaagagctctcgtcctcact
cctacccgtgagctggccgcccaagtgggtgaaagtgtttccgcttatggccaacacctt
gcgcttcgctcccacattatttttggtggcgttggtcagcaaccccaggttgatgcctta
aaagcaggccttgatgtcttggttgccaccccaggccggctgcttgaccttcaacagcaa
ggccatgtcgatttatccgcagtggaaatccttgttctcgatgaagcggatcgcatgctc
gacatgggctttattcatgacattaagcggctgctgcgcttggtgccaaaaaagcgtcaa
aacctgctattttccgcgacgttttcaaatgaaattcaagcgctcgcccagcaactactc
gtcaaccctgcgttgattgaagttgcaccgcgcaacaccacagccgaacgaattgagcag
gccatttatcgcgtagatcgcgataaaaagcgtgaactactcgctcatttgatccaacag
catggctggtttcaggtgttggtgtttacacgcaccaaacatggcgctaaccgcctagca
gagcagctctccaagcaagatattcctgcgatggcaatccatggcaataaaagccaaggc
gccagaactcgggctctaggcgctttcaaaagcggtgacctacaggtactggtggccacc
gatatcgccgcgcgcgggctggatatcaatgaactaccccacgtagtgaacttcgacctg
cctaatgtagcggaagactatgtgcaccgtattggccgcacaggtcgtgcaggtagcaat
ggtgaagccgtctcactggtatgtgtcgatgagcatggtttactcagcggcatcgaacgg
ttaatcaagcagacacttcccaagcgtattgagcccggtttcgaacctgaccccaacgcc
aagcccgagccgattgaaaatgggcgccggggccagcggcaaccccgcgccaaacgtaag
cctgacgggcaatccgcgtcttcaagcggcgaacgccgccgcgcccgccgctag
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