Halomonas sp. GFAJ-1: BB497_13850
Help
Entry
BB497_13850 CDS
T05375
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hag
Halomonas sp. GFAJ-1
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_13850
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_13850
Enzymes [BR:
hag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BB497_13850
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Topoisomerases
BB497_13850
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BB497_13850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AVI63714
UniProt:
H0IYZ7
LinkDB
All DBs
Position
complement(3071298..3073925)
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSVEEKAEYKKRKAQDQLIRRMGIDPGNGWEAHYEVLPGKEKVVAELKKLAEKADAVYL
ATDLDREGEAIAWHLRETIGGDESRYKRVVFNEITKNAIQDAFKAPGVLNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHADLVS
PDGELVRFVLARQDGKAFRPTSQKDTLDRIEKLRKAKLAITSREDKPTSSKPTAPFITST
LQQAASGRLGFSVKKTMTMAQRLYEAGYITYMRTDSTNLSKDAVEGVRAFIGDEYGERYL
PEAPNRYSSKESAQEAHEAIRPSSVERKASDLAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLSVEVEGYDLRAKGRVLKFDGYTRVMKPSGKNEDQSLPDLPKGTPMGLEKLDPQQH
FTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDIVTER
LKESFPDLMDYSFTARMEDSLDEVAEGERNWQALLDAFYEEFRGELSKAESEDGMRPNQP
VPTDIDCPSCGRKMQIRTASTGVFLGCSGYNLPPKERCKTTIDLIPGEEAVAEDAGEEAE
TNALRAKHRCEKCGTAMDNYLIDETRKLHICGNSPDCDGYDIETGKFKIKGYDGPIIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEVAPPKMDPIPMPELACQKVDDHYVL
RDGASGLFLAASKFPKNRETRPPLVEELKSHAEELPEKYHFILKAPSKDPDGRPAQIRFS
RKNKEQFVMTDEEGKATGWKATYEAGKWHVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcactggtcatcgtcgaatcgccagcgaaagcgaagacgataaataagtac
ctcggcaacgatttcatcgtcaagtcgagcgtgggtcatatacgtgacctaccgaccagc
ggctcaggtaaggcagcctccgatcccaaggagcgcgctcgccaggccgcggcaacgcgt
aagatgtccgtggaagagaaggcagagtataagaagcgcaaggcccaggaccaacttata
cggcgtatgggtatcgatcctggtaatggatgggaagcccactacgaagtgttacccggt
aaagagaaagtggttgccgagctaaaaaaattagccgaaaaggctgatgctgtttatctc
gcaacggatttggaccgcgaaggtgaagccattgcctggcacctgcgcgagaccatcggt
ggtgatgaaagccgttacaagcgcgttgtatttaacgagattaccaagaacgctatccag
gatgcgtttaaggcacctggggtgctcaatattccacgggttgaggctcagcaggcgcgc
cgcttcctagatcgcgtcgtaggtttcatgctctctccgttgctgtgggccaaaattgcc
cgtggcctttcggccggtcgcgtacaatcagtcgccgttcgcctgatcgtggagcgtgag
cgtgaaattcgtgccttcattcctgaagagttttgggatgtgcatgccgatctggtttcg
ccggacggtgagctggtgcggtttgtgttggcgcgtcaggatggcaaggcatttcgacca
acctcgcagaaagacacccttgatcgcattgagaaactgcgcaaggcgaagcttgccatc
acctcccgtgaagataagcccacgagctccaagcccacggcgccgttcatcacttcgacg
cttcagcaagccgctagtggtcggttagggttttcagttaaaaagaccatgaccatggct
cagcgcctttacgaggcgggctacatcacctatatgcgtacggactccacaaatctctcc
aaagatgcggtggagggggtgcgggcttttattggcgatgagtacggtgagcgctacttg
ccggaagcacctaaccgttacagtagtaaagagagcgcccaagaggcccacgaggcgatc
cggccttctagcgttgagcgtaaagcgtctgacttagcgggaatggaacgcgacgctgaa
cgtctttacgaacttatttggcgccagtttgtggcgtgtcaaatgaccccggctgaatac
ctatctagcacgctaagtgttgaagtagaaggttacgatctgcgtgccaaagggcgtgtg
cttaagtttgatggctatacccgagttatgaagcccagtggtaaaaacgaagatcaaagc
ctgccagatttgcccaaaggcacgcccatgggccttgaaaagcttgaccctcagcagcat
tttactaagcctgccccgcgttatacggaagcaagtttggtaaaagagttggagaaacag
gggattggccggccttctacctatgcatctattatttccacgattcaggatcgtggttat
gtgaagctagaaaatcgtcgtttttatgctgaaaaactgggcgatatcgttaccgagcgt
ttgaaagagtccttccctgacttgatggattactcttttacggcgcgtatggaagatagc
ctagatgaggtggctgaaggtgagcgtaactggcaagcgttgctagatgctttttacgaa
gagtttcgtggagagttaagcaaagctgaaagcgaagatggtatgcgccccaaccagccg
gtgcctacagatatcgactgcccgagctgtggtcgtaaaatgcagatccgcacggcatca
accggggtgttccttggctgtagtggctacaacttgcctcctaaagagcgctgtaaaacg
actattgatctgattccgggcgaagaggcagttgccgaagatgccggtgaagaagcagaa
accaatgccctgcgtgccaaacatcgttgcgagaagtgtggcacggcaatggataactac
ctaattgatgaaacccgtaaactgcatatttgtggtaacagtcccgattgcgatgggtac
gatattgagacaggtaagttcaagataaaagggtatgacgggcccatcattgagtgcgat
aaatgcggctcggaaatgcagctgaagtctgggcgttttggtaagtacttcggctgtaca
aatagcgagtgtaaaaatacacgtaagttattgaaaagtggtgaagtggcgccgcctaag
atggatccaattccaatgccagagctggcctgtcaaaaagtggatgaccactacgtactg
cgtgacggcgccagtggcttattccttgcggctagcaagtttcctaaaaaccgggaaacg
cgcccgcccttggtggaggagttaaagtcccacgccgaggaactgccggagaagtaccac
tttattctcaaggcgcctagtaaagatccagacggacgcccagcgcaaattcgtttctcg
cgtaaaaataaagagcagtttgtgatgactgacgaggaaggaaaggcgactggctggaaa
gcgacctatgaagccggtaaatggcatgtggaggacaagcgtaagtga
DBGET
integrated database retrieval system
