Halomonas sp. GFAJ-1: BB497_14905
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Entry
BB497_14905 CDS
T05375
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hag
Halomonas sp. GFAJ-1
Pathway
hag03030
DNA replication
hag03430
Mismatch repair
hag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB497_14905
03430 Mismatch repair
BB497_14905
03440 Homologous recombination
BB497_14905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hag03032
]
BB497_14905
03400 DNA repair and recombination proteins [BR:
hag03400
]
BB497_14905
Enzymes [BR:
hag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BB497_14905
DNA replication proteins [BR:
hag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BB497_14905
DNA repair and recombination proteins [BR:
hag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BB497_14905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
RuvB_N
AAA_22
AAA_16
AAA_14
AAA_5
AAA_18
AAA_2
AAA_30
AAA_19
Mg_chelatase
nSTAND3
DciA
TsaE
AAA_24
AAA_28
Rad17
Herpes_Helicase
NTPase_1
SKI
HTH_39
Motif
Other DBs
NCBI-ProteinID:
AVI63906
LinkDB
All DBs
Position
complement(3309963..3311852)
Genome browser
AA seq
629 aa
AA seq
DB search
MSYQVLARKWRPRTFHELVGQAHVQRALVNALDQGRLHHAYLFTGTRGVGKTTLARILAK
CLNCTANGRGDEGITSTPCGQCDSCKAIDEGRFVDLIEVDAASRTKVEDTRELLDNVQYA
PTQGRYKVYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPATVLSRCLQFT
LKHMPPERVVEHLTYVLGEEGVAFDESALWLLGKAAEGSMRDAMSLTDQAIAFGQGAVRH
ADVAAMLGTLDHRHVLALVEALADVDVQRLLAEVAQLSEQGPDFAAVLDELSAILHRLAV
AQMVPDAVDNSHGDRALIQQLAGRFTAEDIQLYYQIGIQGRGDMVHAPDLRSALEMTLLR
MLAFRPQGVPKPPRTPLPLRPEPAEGTNGSALQPASMGEPASSKKPEPAPAVVQASPPAQ
AVVQEAPTPEPPVDKSEQAPPWSLDEVESAAMLSPEPEPEPEPEPEPEPEPEPEPMPMPV
AQASPAPESPVPQADSVLDHHQWLARFNALGLGGLTRNLAAHCQVESDDGHTLVLRLDPG
QAAMKAEVHQTRIEKALKAQGVPRRIEFTVAELAADVETPRQQEERLHKERHALAVDLLH
RDPNIQKLQQAFGATLVESTVKPASDVRS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagctatcaggttctggcccgcaaatggcggccgcgtacattccacgagcttgtgggt
caggcccatgttcaacgtgccttggtcaatgcccttgatcaaggccgcttacatcatgcc
tacctatttacaggtactcgcggtgtgggtaaaaccacattggcgcgtatcttggctaag
tgccttaattgcactgccaatgggcgaggtgatgaaggcatcacgtcaaccccttgtggc
cagtgcgacagctgcaaagcgattgacgaaggccgctttgttgacctaatcgaagtcgat
gcagcgtcacgcacgaaagtcgaagacactcgcgaactgctggataacgttcagtacgcg
cccactcaagggcgctacaaagtgtacttaattgacgaagtacacatgctctctaccagc
agctttaacgcactgctgaaaacgcttgaagagccaccgccccacgtcaagtttttgttg
gcgactaccgacccgcaaaagttacctgccactgtgctgtcgcgctgtttgcagtttacc
ttaaagcatatgccccccgagcgcgtggttgagcatctaacctatgtgctgggtgaagag
ggcgtggcgtttgatgagagtgcgttgtggctgttaggtaaagcggccgagggctcaatg
cgtgatgctatgagcctgacggatcaagccattgcctttggccaaggcgcggtgcgtcat
gctgatgtagccgccatgctgggtacgttggaccaccggcatgtcctagcattggtagag
gcgctggcggatgtagatgtgcagcggttactggcagaagtcgcgcagctttcagagcaa
gggcctgatttcgcggcagtgcttgatgaactaagcgccattttgcaccgcttggcggtg
gcgcaaatggtgcccgatgcggtagataacagccacggtgaccgcgcgcttattcagcag
ttggcaggccgctttaccgctgaagatattcagctctattaccaaattggtattcaagga
cggggcgatatggtgcatgcccctgacctacgcagtgccttagaaatgacactgctgcgt
atgctggcgtttcgcccccaaggggtgcctaagcctccccgtacgccgttgccgttacgc
ccagaaccagcggaaggcactaatgggtcagcattgcaaccagcgtcaatgggtgaacca
gcatcgtcaaaaaagcctgaacctgcaccggcagtagtgcaggctagtccgcctgctcag
gccgttgtgcaggaggcgccaacgcctgaacctcccgttgataaaagtgagcaagccccg
ccctggtcgcttgatgaagtagaaagcgccgctatgctctctccagagccagagccagag
ccagagccagagccagagccagagccagagccagagccagagccgatgccgatgccggtg
gcgcaggcttcgccagcaccagagtcacctgtccctcaggctgatagcgtgcttgaccac
catcagtggctggctcgatttaatgcgctaggcttgggaggccttacgcgtaatttagcg
gcgcactgccaagtcgaaagcgatgatggtcacaccctcgtgcttcggctagatccaggg
caggccgcgatgaaggcggaggtacatcagactcgcatcgagaaagcgcttaaagcgcag
ggcgtaccccgtcgtattgaatttacggtagctgaactggcggctgacgtggaaacgccg
cgtcagcaagaagagcggttacacaaagagcgccatgctttggctgttgatctactgcac
cgcgaccccaatatacagaagcttcagcaagcatttggggcaacgcttgtagagtcaacc
gttaagccagcgtctgacgtgcgttcctag
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