Halomonas sp. GFAJ-1: BB497_16325
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Entry
BB497_16325 CDS
T05375
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
hag
Halomonas sp. GFAJ-1
Brite
KEGG Orthology (KO) [BR:
hag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hag03016
]
BB497_16325
Enzymes [BR:
hag01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
BB497_16325
Transfer RNA biogenesis [BR:
hag03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BB497_16325
Prokaryotic type
BB497_16325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AVI64166
UniProt:
H0J4D7
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All DBs
Position
complement(3610081..3611121)
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AA seq
346 aa
AA seq
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MLNLPPWQRLLDGHFGAPKPGQYRAQPEDFIVDEQLDFTPEAHGEHLWLRLEKRHQTTLD
VVKSVSRLCNVTPKDIGYSGMKDRVAVTRQWVSVHLPGREAPAELSASLDALGIKVLEQA
RHPRKLKRGVHRTNHFTLRLSGEAVQADDFEQRWQALCTHGVANYFGPQRFGPGGRNLQR
AEAVLAKGWRKRDDRQGMMLSTARSFLFNELLSARLADGSWCQPLPGDTLMLDGTQSVFS
VDEVDDSLVARAGELDIHPTGVLWGVGERAKQQIAAYELRLLAQHPALCEGLEKSGVKRA
QRALRIRLLAPQLRREHEAVELSFALPRGSFATAVVSELIEHPDFV
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacttaccgccctggcagcgcttgctagatggccattttggggcgcctaagccg
ggtcagtaccgcgcccagccagaggactttattgtcgacgagcagctcgactttacccct
gaagcccatggggaacacctgtggttacggcttgaaaagcggcaccaaaccacgttagat
gtggtcaaaagcgtcagtcggctatgtaacgtaacgccaaaagatattggctactccggt
atgaaagatcgtgtggcggtcactcggcaatgggtaagcgttcatctacccgggcgagag
gcgcccgctgagttatcggcatcgctagatgcactgggcatcaaagtgctagagcaagcg
cgccacccccgaaagcttaaacgcggcgttcaccgcaccaaccattttactttgaggttg
agcggtgaagcggtgcaggccgacgactttgagcagcgctggcaagcactgtgtacccac
ggcgtagccaactactttggtccccagcgttttggccccggagggcgcaacttgcagcgc
gcagaagcggttctcgccaaaggttggcgcaagcgtgacgaccgccaagggatgatgcta
tcaaccgcgcgcagttttttgtttaacgagttactaagtgcccgtttagccgatggctcc
tggtgccagcccttaccaggcgatacgctaatgcttgatggcacccaaagcgtgtttagc
gttgatgaggtggatgatagcttagtggctcgcgcgggagagttggatattcacccgaca
ggcgtactttggggcgttggcgaaagagcaaaacagcagatagcggcttacgagttacgg
ctgttggcacaacacccagcgctatgtgaagggttagaaaagagcggcgttaagcgcgct
cagcgggcgttgcggattaggctgttggcgccacagctgcgcagagagcatgaggctgtg
gagctctcttttgcgctgccgcggggtagctttgccacagcggtggttagtgagttgatt
gagcatcccgattttgtttaa
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