Halobacterium sp. GSL-19: JT689_07050
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Entry
JT689_07050 CDS
T07117
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hags
Halobacterium sp. GSL-19
Pathway
hags03022
Basal transcription factors
hags03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hags00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JT689_07050
09124 Replication and repair
03420 Nucleotide excision repair
JT689_07050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hags03021
]
JT689_07050
03400 DNA repair and recombination proteins [BR:
hags03400
]
JT689_07050
Enzymes [BR:
hags01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JT689_07050
Transcription machinery [BR:
hags03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JT689_07050
DNA repair and recombination proteins [BR:
hags03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JT689_07050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
ERCC3_RAD25_C
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
MarR_2
AAA_30
DUF6886
AAA
AAA_33
AAA_5
AAA_25
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QRY21786
LinkDB
All DBs
Position
996159..997961
Genome browser
AA seq
600 aa
AA seq
DB search
MTDISKDRFLDALEGVGRPVATAEQIARELDCTQAAAADALATLAADGEVERANVEPDPV
VWYPRDWLELTDRERIVPFPDRREIIVDQPSQLTRAQLSRVAHLTDTTRTGSYRYEMRAE
DVWAAPFDSLSDLVAAITELLPRDCPTLIEWVREQWTRATRFRLRTHDDGYVVLEAATDS
LLGNVAEQKLDDDVLRAPISDTEAWVAAEQVAPLKRTLYEAGYPVRDDRDLESGEPLAVD
LHLDLRPYQQDWVDRFEDASAGVLVGPPGSGKTVAAMGALESVGGETLVLVPSRELATQW
REELLANTSLTGDQIGEYHGGEKRVRPVTIATYQTAGMDRHRHVFDDREWGLIVYDEVHH
IPAEVARRSASLQSKHRLGLTATPVREDDKEADIYTLVGRPIGTDWDALFDAGFVAEPEV
EIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEAEIEHLVDQHADTQALVFVDYLSQG
ERIAERLDAPFVNGETPHSRRETHFDQFRTGALDALVVSRIGDEGIDLPDAEFAVVASGL
GGSRRQGAQRAGRTMRPGSQSLLFVLATRGTEEEDHARSRMRHLSTKGVRVTESDAAHSP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacatctccaaggaccggttcctcgacgcgctggagggcgtcggccggccggtg
gcgacggccgaacagatcgcgcgcgaactcgactgcacgcaggccgcggccgccgacgcc
ctggccacactcgccgcggacggcgaggtcgaacgcgcgaacgtcgaacccgaccccgtg
gtgtggtatccacgggactggctggagctcaccgaccgggagcgcatcgtgccgttcccg
gaccgccgcgagatcatcgtcgatcagcccagccagctcacgcgcgcccagctctcgcgg
gtcgcacacctcacggacaccacccgaacggggagctaccgctacgagatgcgcgccgaa
gacgtgtgggccgcccccttcgacagcctctcagacctcgtggcagccatcacggaactg
ctgccccgggactgcccgacgctcatcgagtgggtgcgcgaacagtggacgcgcgccacc
cggttccggctgcgcacccacgacgacggctacgtcgtcctggaagccgccaccgacagc
ctcctggggaacgtcgccgagcagaaactcgacgacgacgtgctccgcgccccgatctcg
gacacggaggcgtgggtcgccgccgagcaggtcgcgcccctcaagcgcacgctctacgag
gccggctaccccgtccgcgacgaccgcgacctcgaatccggggagccactggccgtcgac
ctccacctcgacttgcggccgtaccagcaggactgggtcgaccgcttcgaggacgccagc
gccggcgtgctcgtcgggccgcccggctcgggcaaaacggtcgccgccatgggcgcgctc
gaatccgtcggcggcgaaacgctcgtgctcgttcccagccgcgaactcgccacgcagtgg
cgcgaggagctgctggcgaacaccagcctgaccggcgaccagatcggcgaataccacggc
ggcgagaaacgcgtccgcccggtcaccatcgcaacctaccagaccgccggaatggaccgc
caccgccacgtcttcgacgaccgcgagtgggggctcatcgtctacgacgaagtccatcac
atccccgccgaggtcgcgcgccggtcggccagcctccagagcaaacaccgcctcgggctg
accgcgacgccggtccgggaggacgacaaggaggccgacatctacacgctcgttggtcgc
cccatcggcaccgactgggacgccctcttcgacgccggcttcgtcgccgagcccgaggtc
gaaatccggtacgtgccgtggcgcgacgacgacgaccgctacgagtacgccgccgccagc
gggcacacccgccgccggctcgccgccgaaaaccccgccaaggaagccgagatcgagcac
ctcgtcgaccagcacgccgacacccaggcgttggtgttcgtcgactacctgagccagggc
gaacgcatcgccgagcgcctcgacgccccgttcgtgaacggcgaaaccccacacagcagg
cgcgaaacccacttcgatcagttccgcacgggcgcactggacgccctcgtggtgtcccgc
atcggcgacgagggcatcgacctgcccgacgccgagttcgcggtcgtggcctccgggctc
ggcgggagccgccggcagggcgcacagcgcgccggccgcaccatgcgccccggcagccag
tcgctgttgttcgtgctggcgacccgcggcaccgaggaggaagaccacgcccgcagccgg
atgcgacacctctccacgaagggcgtccgcgtgaccgaatccgacgccgcccactcgccg
tga
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