Halobacterium sp. GSL-19: JT689_07230
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Entry
JT689_07230 CDS
T07117
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hags
Halobacterium sp. GSL-19
Brite
KEGG Orthology (KO) [BR:
hags00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hags03016
]
JT689_07230
Enzymes [BR:
hags01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JT689_07230
Transfer RNA biogenesis [BR:
hags03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JT689_07230
Prokaryotic type
tRNA splicing ligases
JT689_07230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRY21821
LinkDB
All DBs
Position
complement(1029721..1031223)
Genome browser
AA seq
500 aa
AA seq
DB search
MSTFDADGHRLTEVEPDVWALADTGDESVPARVLANRSLLAQISTDNTLTQLRNVAGMPG
AVAPALCMPDGHQGYGFPVGGVAAFDAEDGCISPGGVGFDINCGVRMLTTTLTYDDVKGR
EAALVDALYDAVPCGLGGGGVHDGTHADLDAALERGIDWCVEEGYAVPADRRHCEDEGRR
PDADLDAVSKKARDRGASQMGSLGSGNHFLEVQRVTDVYDDDTAAAFGLAEDQVVVLIHC
GSRGLGHQICSDYLRRIEQEHPDFLASLPNKDLAAAPAGSELAASYYGAMCAAINFAWVN
RQLITHAVRETFADVFDAPDWEALGMDLLYDVSHNIAKRETHAVVETEDGYSLAGDGERV
KRELFVHRKGATRAFPAGHPEVPAAYREVGQPVIIPGSMGAGSYVLRGGSQSLGRTFGST
AHGAGRLMSRTQAKDEYQGGDVQDALEADDDIHVKAASGATIAEEAPGVYKDIDDVVDVS
AGLGVGDPVVRTYPVCNVKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccttcgacgccgacggccaccggctcaccgaagtcgagccggacgtctgggcg
ctcgcggacaccggcgacgagtcggtgccggcgcgcgtgctcgccaaccgcagcctcttg
gcgcagatcagcaccgacaacacgctcacccagctccgcaacgtcgccggcatgcccggt
gccgtcgcccccgcgctctgcatgcccgacggccaccagggctacgggttccccgtcggc
ggcgtcgccgccttcgacgccgaggacggctgcatctcgccgggcggcgtcggcttcgac
atcaactgcggcgtccgcatgctgaccacgacgctcacctacgacgacgtcaagggccgc
gaagcggcgctcgtggacgcgctgtacgacgccgtcccctgcgggctgggcggcggcggc
gtccacgacggcacgcacgccgacctggacgccgccctcgaacgcggcatcgactggtgt
gtcgaagaagggtacgccgttcccgcggaccgccgccactgcgaggacgaggggcggcga
cccgacgccgatctggacgccgtctcgaagaaggcccgcgaccgcggcgcgagccagatg
gggtcactcgggtcgggcaaccacttcctggaagtccagcgcgtcaccgacgtctacgac
gacgacaccgccgcggcgttcgggctcgccgaggaccaggtcgtcgtgttgatccactgt
ggctcccgcggcctgggccaccagatctgctcggactacctgcgccgcatcgaacaggag
caccccgacttcctggcgtcgctgccgaacaaggacctcgcagccgcgcccgcgggctcc
gagctcgccgcgtcgtactacggcgcgatgtgcgcggccatcaacttcgcgtgggtgaac
cgccagctcatcacccacgccgtccgggagacgttcgccgatgtcttcgacgcgcccgac
tgggaggccctcgggatggacctgctgtacgacgtgtcccacaacatcgcgaagcgcgaa
acccacgcggtcgtcgagaccgaggacggctacagcctcgccggggacggcgagcgcgtc
aagcgcgagctgttcgtccaccggaagggcgcgacgcgcgcgttccccgccggccacccg
gaggtgccggcggcctaccgggaggtcggccagccggtcatcattccggggtcgatgggc
gcgggcagctacgtgctgcgcgggggcagccagtcgttggggcggacgttcggttcgacc
gcccacggcgcgggccgcctgatgagccgcacccaggccaaagacgagtaccagggcggc
gacgtgcaggacgccctcgaagccgacgacgacatccacgtgaaggcggcctcaggcgcg
acgatcgcggaggaagcgcccggcgtctacaaggacatcgacgacgtggtcgatgtgtca
gccggcctgggcgtgggcgaccccgtcgtccgcacgtatccggtctgcaacgtcaagggg
tag
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