Halobacterium sp. GSL-19: JT689_10270
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Entry
JT689_10270 CDS
T07117
Symbol
endA
Name
(GenBank) tRNA-intron lyase
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hags
Halobacterium sp. GSL-19
Brite
KEGG Orthology (KO) [BR:
hags00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hags03016
]
JT689_10270 (endA)
Enzymes [BR:
hags01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
JT689_10270 (endA)
Transfer RNA biogenesis [BR:
hags03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
JT689_10270 (endA)
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
Motif
Other DBs
NCBI-ProteinID:
QRY22389
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Position
complement(1595532..1596563)
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AA seq
343 aa
AA seq
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MDGDLRGDTVHIGGDARQRFHDARGYGYPLGGNDIAVSLVEAAHLLFRGDLDSVDGMGFR
AFLTDREAGFAARFLVYVDLRDRGFYLVPDRDPWWRDPGDGDFVVFPRGNTRRDGVVKHR
VRVVDERTTLPVDGLSESVLAVVDEESEITYLDIAPETPTGETTLDRPTDVPGVLLDDRV
LVWEPPQRLHNAGFYGQPLGGRAADHDALQLSLVEAAYLIDAGVLTLTDATIDDVRARGR
LGEGEHFDCRLAVYRALRDAGAVPKTGFKFGADFRVYSAVSSVDDLGHSELLVRVITDTH
VFSPGDLSLDVRLAHGVRKRMVFAATDDTDDTIRWLSVSRLTP
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgatctgcgcggggatacagtgcatatcggtggcgacgcccgccagcgattc
cacgacgcacgcgggtacggctacccgctgggcggcaacgacatcgcggtgtcgctcgtg
gaggccgcccacctcctgttccgtggcgacctcgattccgtcgacggcatggggtttcgg
gcgtttctcacggaccgcgaggcggggttcgccgcccggtttctggtctacgtcgacctc
cgggatcgggggttctacctggtgccggaccgcgacccgtggtggcgcgaccccggcgac
ggcgatttcgtggtgttcccgcgcgggaacacgcgccgcgacggcgtcgtgaaacaccgg
gtgcgcgtggtcgacgagcgcacgaccctccccgtcgacgggctctcggagtcggtgctg
gcggtcgtcgacgaggaaagcgagatcacctacctcgacatcgcccccgaaacccccacc
ggggagacgacgcttgaccgccccaccgacgtcccgggggtgttgttggacgaccgcgtg
ctcgtctgggagcccccacagcgcctgcacaacgccggcttctacggccagcccctcggc
gggcgcgccgccgaccacgacgccctccagttgtcgctcgtggaggcggcgtacctcatc
gacgccggcgtgttgacgctcaccgacgccaccatcgacgacgttcgtgcccgcgggcgg
ctcggtgagggcgagcatttcgactgccggctggccgtctatcgcgcgctccgtgacgcc
ggcgcggtcccgaaaaccgggttcaagttcggcgccgatttccgcgtgtactcggcggtg
tcgtcggtcgacgacctcgggcactcggagctgctggtgcgcgtgatcaccgacacccac
gtgttctccccgggggacctctcgctcgacgtgcgactggcccacggcgtccgcaagcga
atggtttttgcggctaccgacgacacagacgacacgattcgctggctttcggtgagtcga
ttgacgccatga
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