Halophilic archaeon: Halar_0972
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Entry
Halar_0972 CDS
T01603
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hah
Halophilic archaeon
Pathway
hah03410
Base excision repair
hah03430
Mismatch repair
hah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Halar_0972
03430 Mismatch repair
Halar_0972
03440 Homologous recombination
Halar_0972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hah03400
]
Halar_0972
DNA repair and recombination proteins [BR:
hah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Halar_0972
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Halar_0972
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Halar_0972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
AEN04737
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Position
complement(258228..259703)
Genome browser
AA seq
491 aa
AA seq
DB search
MSDPVPAMADRAAACADCLRGADSVLLASHIDADGLTSAAVAASALERAGITFETVFEKQ
LDADAIDRIAATDHDVALFTDFGSGQLDDIIPHEERGAFTPVIADHHQPATGEEGAEPPD
TALHLNPLLFGINGASELSGAGASYVLARALEPEDGDNRDLAALAVVGAVGDMQDTDGGL
VGANQQIVAEGVEAGVLEEVTDISLYGRQTRPLPKLLEYASELQIPGISGDEAGSVRFLS
GLDLELKVDGDWRRWVDLSFEERQTVASALMRHAIDRGVPPQRVNSVTTTTYILSAEEVG
TELRDVSEFSTVLNATARYERADVGLAVCLGYRDEALDEARSLLRNHRRNLSEGLEWIKN
EGVNQETNFQWFDAGTRIRETIVGIIAGMALGASGVRRDQPIIAFADESAEDVKVSARGS
GFLVRDGLDLSVVMGEASEAVGGGGGGHDVAAGATIPKGSREAFLKHADRIVGEQMAEAE
DEAEDDKADEE
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccccgtccccgcgatggccgaccgcgcggccgcgtgtgccgactgcttgcgc
ggcgccgactccgtgctgttggcctcccacatcgacgccgacggcctcaccagcgccgcc
gtcgccgccagcgcgctcgagcgggccggaatcaccttcgagactgtcttcgagaagcag
ctcgacgcggacgcgatcgaccgaatcgccgccaccgaccacgatgtggcgctgttcacc
gacttcgggagcgggcaactcgacgatatcatcccgcacgaggagcgtggcgcgttcacc
cccgtcatcgccgaccaccaccagccagcgaccggcgaggagggagcggagccccccgat
acagccctccacctcaacccactgctgttcggcatcaacggcgcgtccgaactctcgggt
gctggcgcgtcgtacgtgctcgcccgcgcgctcgaacccgaggacggcgacaaccgggac
ctcgccgcgctggccgtcgtcggcgccgtcggcgacatgcaggacaccgacggtggcctc
gtcggcgcgaaccagcagatcgtcgccgagggcgttgaagcgggcgtcctcgaggaggtg
accgatatctcgctctacggccggcagacgcgcccactcccgaaactgctcgaatacgcc
agcgaactccagattcccggcatctcgggcgacgaagcgggctcagttcggtttctctcg
ggactggacctcgagctcaaggtcgacggcgactggcggcgctgggtcgacctctccttc
gaggaacgacagaccgttgcgagtgcgctgatgcgccacgccatagaccgcggggtgcca
ccgcagcgggtcaacagcgtcacgacgacgacctacatcctctctgcggaggaggtgggg
acggaactccgagacgtaagtgagttctcgacggtgctcaacgccacggcgcgctatgag
cgcgcagacgtgggactggcggtctgtctgggctaccgcgatgaggcgctcgatgaggcc
cgctcgctgctcagaaaccaccgtcggaacctctcggaaggcttggagtggatcaagaac
gaaggtgtcaatcaggagacgaatttccagtggttcgacgccggcacccgcattcgggag
acgatcgtcggcatcatcgcggggatggcactgggcgccagcggcgtccgccgcgaccag
ccaatcatcgcgttcgccgacgagagcgccgaggacgtgaaagtctcggcccgcggcagc
ggcttcctcgttcgtgacggcctcgacctctctgtcgtgatgggagaagcctccgaggcc
gtcggcggcggcggcggcgggcacgacgttgctgccggagcgacgattccgaaagggagt
cgcgaggcgtttctgaagcatgcggaccgaatcgtcggcgagcagatggccgaggcagaa
gacgaagctgaagacgacaaagccgacgaggagtga
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