Halophilic archaeon: Halar_1865
Help
Entry
Halar_1865 CDS
T01603
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hah
Halophilic archaeon
Pathway
hah04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Halar_1865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hah03019
]
Halar_1865
03009 Ribosome biogenesis [BR:
hah03009
]
Halar_1865
04131 Membrane trafficking [BR:
hah04131
]
Halar_1865
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hah04147
]
Halar_1865
Messenger RNA biogenesis [BR:
hah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Halar_1865
Ribosome biogenesis [BR:
hah03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Halar_1865
Membrane trafficking [BR:
hah04131
]
SNARE
SNARE associated proteins
Others
Halar_1865
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Halar_1865
Exosome [BR:
hah04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Halar_1865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
AAA_7
Mg_chelatase
Sigma54_activat
ATPase
ABC_tran
AAA_18
AAA_3
DUF815
AAA_25
AAA_17
AAA_lid_PRS2_C
AAA_24
NB-ARC
Parvo_NS1
TsaE
AAA_11
Vps4_C
AAA_30
Zeta_toxin
PhoH
SLFN-g3_helicase
KAP_NTPase
NACHT
IPT
Motif
Other DBs
NCBI-ProteinID:
AEN05575
LinkDB
All DBs
Position
1124990..1127212
Genome browser
AA seq
740 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEAEKAKKLVLAPPEEASVQFGSEAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPDGVCLVTEDTEVELREEPISGYD
KTGGGITYEDIGGLEDEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLDSRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEV
GRKEVLQIHTRGMPLSDGVDLDHLADETHGFVGADIESLGKEAAMKALRRYLPKIDLDEE
DIPPSLIDRMIVNKKDFQGALNEVEPSAMREVLVELPKITWEDVGGLEDPKQQVKEAVEW
PLSNPEKFDRMGIEAPKGVLLYGPPGTGKTLMAKAVANETNANFISIRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDSLAPSRGQEMGNNVSERVVNQLLTELDGLEEMGEV
MVIAATNRPDMIDPALIRSGRFDRLVLIGAPDEVGRKKILDIHTEDTPLSPDVSLKEIAE
ITDGYVGSDLESICREAAIEALRESDDADDVEMSHFRKAIESVRPTITEDLMSYYEEVEK
EFRGSAKSQLDRGGPRHGFQ
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactggaggtcgcgaaggcgtacccgaacgactcgggtcgcggtatc
gcccggctcgaccccgatacgctgctgcatctaaagctctcacccggcgacatcatcgag
atcgagggggccgagacgaccgccgcgaaggtctggcgggccgaccggcaggactggaac
accgacaccgtccgaattgacgggtttacccgccagaacgccgacgtgggaatcggcgag
cgggtgaccatccgcaaggccgaagccgagaaggccaagaagctggtgctggccccgccc
gaggaggcctcggtccagttcggctccgaagccgcaggaatggtcaaacgccagattctg
aagcgcccggtcgtcgagcgtgacatcgttcccgtgatgtccagcacgaaccacccgttc
atgcgctcaccggggcaggccatcccgctcatcgctgtcgagaccgagcctgacggcgtc
tgtctggtcaccgaagacacggaggttgagctccgtgaggagccaatctcgggctacgac
aagaccggcggcggcatcacctacgaggatatcggtgggctggaagacgagattcagcgc
gtccgggagatggtcgagctgccgatgaaacaccctcaaatcttcaagaaactcggcatc
gagccgccacagggggtactgctccacgggccgcccggcaccgggaagacgctgctggcg
aaagccgtcgccaacgagacctccgcgagcttcttctctatcgcgggccccgagattatc
tcgaaatactacggcgaatccgaacagcaactccgggagatcttcgaggatgccaaagac
gacagcccatccatcatcttcatcgacgaactcgactccatcgcgcccaagcgtgaggac
gtgaccggcgaggtcgagcgtcgtgtcgttgctcagctgttgacgatgatggacggcctc
gactcccgcggccaggtcatcgtcatcgctgcgaccaaccgcgtcgacagcgttgacccc
gcgctccgccgccccggtcgcttcgaccgcgaaatcgagattggcgtccccgacgaggtg
ggtcgcaaagaggtgctccagattcacacccgtgggatgccgctctcagacggcgttgac
ctcgaccacctggctgacgagacccacggcttcgtcggcgccgacatcgagagcctgggc
aaggaggccgcgatgaaggccctgcgccggtacctccccaagatcgacctcgacgaggag
gatatcccgccgagcctcatcgaccggatgatcgtcaacaagaaggacttccagggcgcg
ctcaacgaggtcgaaccctccgcgatgcgcgaggtcctggtcgaactccccaaaatcacg
tgggaggacgttggcggtctcgaggaccccaaacagcaggtcaaggaggccgtcgagtgg
ccgctctcgaaccccgagaagttcgaccggatgggcattgaggcgccgaagggcgtgctg
ctctacggcccgcccggcaccgggaagacgctgatggcgaaagccgtcgccaacgagacc
aacgcgaacttcatctcgatccgcggcccgcaactcctctcgaagtgggtcggggagtcc
gagaaggccatccgccagacgttccggaaggcccgacaggtctcgcccaccattatcttc
ttcgacgagctcgactcgctcgcgcccagccggggacaggagatgggcaacaacgtctcc
gagcgcgtcgtgaaccagctcctgaccgaactcgacgggctggaggagatgggcgaggtg
atggtcatcgccgcgaccaaccgtccggacatgatcgaccccgcactcatccgctcgggc
cggttcgaccggctggtgctcatcggcgcccccgacgaggtgggccgcaagaaaatcctc
gatatccacaccgaggacaccccgctttcgccggacgtgagcctgaaagagattgccgaa
atcaccgacggctacgtcggatcggacctcgaatccatctgccgggaggctgccatcgag
gcacttcgggagagcgacgacgccgatgacgtggagatgagtcatttccggaaggccatc
gagtcagtccggccgaccatcactgaagatctgatgagctactacgaggaggtcgaaaag
gagttccgcggcagcgccaagagccaactcgaccgcggcggcccgcgccacggcttccag
tga
DBGET
integrated database retrieval system
