Halophilic archaeon: Halar_2098
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Entry
Halar_2098 CDS
T01603
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hah
Halophilic archaeon
Pathway
hah04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Halar_2098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hah03019
]
Halar_2098
03009 Ribosome biogenesis [BR:
hah03009
]
Halar_2098
04131 Membrane trafficking [BR:
hah04131
]
Halar_2098
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hah04147
]
Halar_2098
Messenger RNA biogenesis [BR:
hah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Halar_2098
Ribosome biogenesis [BR:
hah03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Halar_2098
Membrane trafficking [BR:
hah04131
]
SNARE
SNARE associated proteins
Others
Halar_2098
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Halar_2098
Exosome [BR:
hah04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Halar_2098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_2
AAA_5
AAA_14
TIP49
AAA_22
AAA_33
nSTAND3
NPHP3_N
AAA_28
RNA_helicase
AAA_7
DUF815
IstB_IS21
Mg_chelatase
ABC_tran
SLFN-g3_helicase
AAA_30
AAA_3
AAA_18
Parvo_NS1
TsaE
NB-ARC
Sigma54_activat
AAA_11
AAA_24
AAA_17
AAA_19
NTPase_1
Vps4_C
PhoH
bpMoxR
AAA_lid_PRS2_C
Zeta_toxin
ATPase
NACHT
Bac_DnaA
Cytidylate_kin2
Motif
Other DBs
NCBI-ProteinID:
AEN05782
LinkDB
All DBs
Position
1337425..1339707
Genome browser
AA seq
760 aa
AA seq
DB search
MKLTIKPLKQKDAGRRLAAVDRVAADEMDLTGGDFIRIDGKQGTAIARVWPGYPEDDGTG
IVRIDGRLRQEASVGIDDRVTVEPADVNPAERVAVALPQQMNIRGDIGGLLRKELSGQPV
TAGQDVQLPLGFGFMGGQGQAVPLKIAETAPSGTVVITDSTEVEISQQPAEQLQDMGQPG
SQGGASEMPDVAYEDIGGLDSELEQVREMIELPMRHPELFGRLGIEPPKGVLLHGPPGTG
KTLIAKAVANEIDASFYTVSGPEIMSKYYGESEEQLRDIFEEAQENSPAIIFMDELDSIA
PKRDDAGGDVERRVVAQLLSLMDGLEERGEIVVIGATNRVDAIDPALRRGGRFDREIEVG
VPDTNGREEILQVHTRNMPLADDVDIDELAESTHGFVGADLASLAKESAMIALRRFRPEL
DLEADEIDAETLARLDVTAKDFREALRGIEPSALREVFVEVPDVSWEDVGGLEGTKERLR
ETIQWPLDYPEVFRQMDVQSAKGVLLYGPPGTGKTLLAKAVANEAESNFISVKGPELLDK
YVGESEKGVREIFSKARENAPTVVFFDEIDAIATERGRNSGDSGVSERVVSQLLTELDGL
EELEDVVIVATTNRPDLIDSALIRPGRLDRHVHVPVPDEEARRAILRVHTQHKPLSDDVD
LDEIASRTEGYVGADLEALAREASMNATREFINTVAPEDADESVGNVRVTMKHFEAALGE
VAPSVTDETREQYAEIEKRFRRSDVERDQTGEDGVARTFQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccatcaagccgctgaagcagaaagacgcggggcgtcgcctcgcggcggtc
gaccgcgttgccgccgacgagatggatctcaccggtggggacttcatccgtatcgacggg
aagcagggcaccgcaatcgcgcgggtctggccgggctaccccgaagacgacggcacgggc
atcgtgcgcatcgatggccggctccgccaagaggccagcgtgggcatcgacgacagggtc
acggtcgaacccgccgacgtgaaccccgccgagcgggtcgcggtcgcgctcccccagcag
atgaacatccgcggcgacatcggcggcctgctccgcaaggagctctcgggccagcccgtc
accgccggccaggacgtccagctaccgctgggctttggcttcatgggtggccagggccag
gcagtgcccctgaaaatcgccgagaccgcaccgagcggaacggtggtcatcaccgacagc
accgaggtcgaaatcagccaacagcccgctgaacagctccaggacatggggcagccgggc
agccagggcggtgcgagcgagatgcctgacgtcgcctacgaggacatcggtggcctcgac
agtgaactcgagcaggtccgggagatgatcgagctgccgatgcgccaccccgagctgttc
ggccggctgggcatcgaaccgcccaagggcgtgctgctgcacggcccgcccggcactggg
aagacgctcatcgcgaaggccgtcgccaacgaaatcgacgcctcgttctacaccgtctcg
ggccccgagatcatgagcaaatactacggggagtccgaagagcagctccgtgacatcttc
gaggaggcccaggagaacagccccgcaatcatcttcatggacgagctcgactccatcgcg
cccaagcgcgacgacgctggcggcgacgtggaacgccgcgtcgtggcccagttgctcagc
ctgatggacgggctggaagagcgcggtgaaatcgtcgtcatcggcgccaccaaccgggtg
gacgccatcgaccccgcgctgcgtcgtggtggccgcttcgaccgtgaaatcgaggtcggc
gtgccggacaccaacggccgcgaggagattctgcaggtccacacgcgcaacatgccgctt
gccgacgacgtggacatcgacgagctggccgaatccacccatgggttcgttggcgccgac
ctggcgtcgctggccaaggagtctgcgatgatcgcactccgacggttccgtccggagctc
gacctcgaggccgacgaaatcgacgccgaaacgctcgcacggctggacgtcaccgcgaag
gacttccgcgaggcgctgcgaggtatcgagcccagcgcgctgcgtgaggtgttcgtcgaa
gttcccgatgtgagctgggaggatgtcggtggactcgaggggaccaaagaacgcctgcgc
gagaccatccagtggccgctggactaccccgaggtgttccgccagatggacgtacaaagc
gccaagggcgtgctgctctacggcccgcccggcaccgggaagacgctgctggcgaaggcc
gtcgccaacgaggccgagagcaacttcatctcggtgaaggggccggaactgctggataag
tacgtgggcgagtccgagaagggcgtccgcgagatcttcagcaaggcccgcgagaacgcc
ccgacggtggtgttcttcgacgagatcgacgccatcgcaaccgaacgtggccgcaacagc
ggtgactcgggtgtcagcgagcgggtcgtctcccagctcctaaccgaactggacgggctg
gaggaactcgaggacgtggtgatcgtcgcgacgacgaaccgaccggacctcatcgatagc
gcgctcatccgcccgggccgcctggaccgccacgtccacgtgcccgtgcccgacgaggag
gcgcgccgcgccatcctccgggtccacacccagcacaagccgctgtccgacgacgtggac
cttgacgaaatcgccagccggacggaggggtacgtcggcgccgacctggaggcgctggct
cgcgaagcctcgatgaacgcgactcgggagttcatcaacacggtggcgccggaggacgcc
gacgagagtgtcggcaacgtccgcgtcacgatgaagcacttcgaggccgcactcggcgag
gttgctccctcggtcaccgacgagacccgtgagcagtacgccgaaatcgagaaacgcttc
aggcgcagcgacgtggagcgcgaccagacgggcgaagacggcgtggcccgaacgttccag
tag
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