Halophilic archaeon: Halar_2843
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Entry
Halar_2843 CDS
T01603
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hah
Halophilic archaeon
Brite
KEGG Orthology (KO) [BR:
hah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hah03016
]
Halar_2843
Enzymes [BR:
hah01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Halar_2843
Transfer RNA biogenesis [BR:
hah03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Halar_2843
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
AEN06475
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All DBs
Position
complement(2053918..2054946)
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AA seq
342 aa
AA seq
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MDGTLRDGVVHLTGNARQQFYDSGGYGRPTGRSELELAPVEAAHLLYRGDIDAVVDEDGR
SLDFQAFLTRTDAVLSFVVYKNLRDRGFYLSPAREGWVEDPGDADFIVYPRGKGPADGEV
AYRLHVVGERLPLPAASIEGHMLAVVDEDGELTYFNTEWLTPSGTADPDLPTGLETTLMD
DRLLVWNPPESLYEDGFFGQRLAGRNAEKGPLQLSLLEAAYLADRSCLNLRAAAVRSHAE
SVEGERFSRRYVAYESLREAGVVPKSGFKFGADFRVYEAFDGVENLGHSDKLVRVTEPGH
EFLPRELSLDVRMAGGVRKRMVFALTDPSGEIDWLSVERITP
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggacgggacccttcgcgatggcgtagtccacctcacgggcaacgccagacagcagttc
tacgactccgggggctacggccggccgaccggcaggagcgaactcgaactcgccccggtc
gaggctgcacatctcctctaccgcggtgacatcgacgccgtcgtcgacgaggacggccgc
tcgctcgactttcaggcgtttctcacgcggactgacgcagtgctctcctttgtggtctac
aagaacctccgcgaccgcgggttctacctctcgccggcccgcgagggctgggtcgaggac
cccggtgacgccgacttcatcgtctacccgcgcggcaagggaccggccgacggcgaggta
gcctaccggctccacgtcgtcggcgagcggttgccgctgcccgctgcgagcatcgagggc
cacatgctcgccgtcgtcgacgaggatggcgaactcacctacttcaacacggagtggctc
acgcccagcggcaccgccgaccccgacctcccaacggggctcgagacgacactgatggac
gaccgactgctggtctggaacccaccggaatcgctctacgaggacggcttcttcggccag
cggctggccggccgtaacgccgagaaggggccgctccagctctcgttgctggaggcggcc
tatctcgccgaccggagttgtctgaacctgcgtgcggctgcggttcggagccacgccgag
agcgtcgagggcgagcggttctctcgtcgctacgtcgcctacgaatcgctgcgggaggcg
ggtgtcgtcccgaaatccgggttcaagttcggcgcggacttccgggtgtacgaggcgttc
gacggcgtcgagaacctgggccactcagacaagctggtccgggtcacagaacccggccac
gagttcctcccgcgggagctctcgctggacgtgcggatggccggcggggttcgcaaacga
atggtttttgcgctgaccgaccccagcggagagatagattggctctccgtcgagcggatc
acgccgtaa
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